Gene : Eucgr.K03169 E. grandis v2.0
Defline:  (1 of 15) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  2631
Name:  ? Eucgr.K03169 Secondary Identifier:  ? PAC:32068597
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03169 0.5kb upstream 0.5kb upstream 5034 true Chr11: 39703455-39708488 Eucalyptus grandis
Eucgr.K03169 0.5kb upstream 0.5kb upstream 500 false Chr11: 39707989-39708488 Eucalyptus grandis
Eucgr.K03169 0.5kb downstream 0.5kb downstream 5034 true Chr11: 39702955-39707988 Eucalyptus grandis
Eucgr.K03169 0.5kb downstream 0.5kb downstream 500 false Chr11: 39702955-39703454 Eucalyptus grandis
Eucgr.K03169 1.0kb upstream 1.0kb upstream 5534 true Chr11: 39703455-39708988 Eucalyptus grandis
Eucgr.K03169 1.0kb upstream 1.0kb upstream 1000 false Chr11: 39707989-39708988 Eucalyptus grandis
Eucgr.K03169 1.0kb downstream 1.0kb downstream 5534 true Chr11: 39702455-39707988 Eucalyptus grandis
Eucgr.K03169 1.0kb downstream 1.0kb downstream 1000 false Chr11: 39702455-39703454 Eucalyptus grandis
Eucgr.K03169 2.0kb upstream 2.0kb upstream 6534 true Chr11: 39703455-39709988 Eucalyptus grandis
Eucgr.K03169 2.0kb upstream 2.0kb upstream 2000 false Chr11: 39707989-39709988 Eucalyptus grandis
Eucgr.K03169 2.0kb downstream 2.0kb downstream 6534 true Chr11: 39701455-39707988 Eucalyptus grandis
Eucgr.K03169 2.0kb downstream 2.0kb downstream 2000 false Chr11: 39701455-39703454 Eucalyptus grandis
Eucgr.K03169 5.0kb upstream 5.0kb upstream 9534 true Chr11: 39703455-39712988 Eucalyptus grandis
Eucgr.K03169 5.0kb upstream 5.0kb upstream 5000 false Chr11: 39707989-39712988 Eucalyptus grandis
Eucgr.K03169 5.0kb downstream 5.0kb downstream 9534 true Chr11: 39698455-39707988 Eucalyptus grandis
Eucgr.K03169 5.0kb downstream 5.0kb downstream 5000 false Chr11: 39698455-39703454 Eucalyptus grandis
Eucgr.K03169 10.0kb upstream 10.0kb upstream 14534 true Chr11: 39703455-39717988 Eucalyptus grandis
Eucgr.K03169 10.0kb upstream 10.0kb upstream 10000 false Chr11: 39707989-39717988 Eucalyptus grandis
Eucgr.K03169 10.0kb downstream 10.0kb downstream 14534 true Chr11: 39693455-39707988 Eucalyptus grandis
Eucgr.K03169 10.0kb downstream 10.0kb downstream 10000 false Chr11: 39693455-39703454 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.9741 0.0 49.6121   Low
cufflinks 38.7181 0.0 101.94   High
cufflinks 19.7639 0.0 55.0373    
cufflinks 34.3252 0.0 91.106    
cufflinks 25.0064 0.0 65.1475    
cufflinks 24.9784 0.0 61.0472    

0 Strain