Gene : Eucgr.K02931 E. grandis v2.0
Defline:  (1 of 1) PTHR11476:SF5 - CLASS II AARS AND BIOTIN SYNTHETASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  2427
Name:  ? Eucgr.K02931 Secondary Identifier:  ? PAC:32067784
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K02931 0.5kb upstream 0.5kb upstream 7360 true Chr11: 36659884-36667243 Eucalyptus grandis
Eucgr.K02931 0.5kb upstream 0.5kb upstream 500 false Chr11: 36666744-36667243 Eucalyptus grandis
Eucgr.K02931 0.5kb downstream 0.5kb downstream 7360 true Chr11: 36659384-36666743 Eucalyptus grandis
Eucgr.K02931 0.5kb downstream 0.5kb downstream 500 false Chr11: 36659384-36659883 Eucalyptus grandis
Eucgr.K02931 1.0kb upstream 1.0kb upstream 7860 true Chr11: 36659884-36667743 Eucalyptus grandis
Eucgr.K02931 1.0kb upstream 1.0kb upstream 1000 false Chr11: 36666744-36667743 Eucalyptus grandis
Eucgr.K02931 1.0kb downstream 1.0kb downstream 7860 true Chr11: 36658884-36666743 Eucalyptus grandis
Eucgr.K02931 1.0kb downstream 1.0kb downstream 1000 false Chr11: 36658884-36659883 Eucalyptus grandis
Eucgr.K02931 2.0kb upstream 2.0kb upstream 8860 true Chr11: 36659884-36668743 Eucalyptus grandis
Eucgr.K02931 2.0kb upstream 2.0kb upstream 2000 false Chr11: 36666744-36668743 Eucalyptus grandis
Eucgr.K02931 2.0kb downstream 2.0kb downstream 8860 true Chr11: 36657884-36666743 Eucalyptus grandis
Eucgr.K02931 2.0kb downstream 2.0kb downstream 2000 false Chr11: 36657884-36659883 Eucalyptus grandis
Eucgr.K02931 5.0kb upstream 5.0kb upstream 11860 true Chr11: 36659884-36671743 Eucalyptus grandis
Eucgr.K02931 5.0kb upstream 5.0kb upstream 5000 false Chr11: 36666744-36671743 Eucalyptus grandis
Eucgr.K02931 5.0kb downstream 5.0kb downstream 11860 true Chr11: 36654884-36666743 Eucalyptus grandis
Eucgr.K02931 5.0kb downstream 5.0kb downstream 5000 false Chr11: 36654884-36659883 Eucalyptus grandis
Eucgr.K02931 10.0kb upstream 10.0kb upstream 16860 true Chr11: 36659884-36676743 Eucalyptus grandis
Eucgr.K02931 10.0kb upstream 10.0kb upstream 10000 false Chr11: 36666744-36676743 Eucalyptus grandis
Eucgr.K02931 10.0kb downstream 10.0kb downstream 16860 true Chr11: 36649884-36666743 Eucalyptus grandis
Eucgr.K02931 10.0kb downstream 10.0kb downstream 10000 false Chr11: 36649884-36659883 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4248 0.0 23.9563    
cufflinks 1.17789 0.0 3.33596   Low
cufflinks 8.00043 0.0 18.7554    
cufflinks 2.47561 0.0 6.49323    
cufflinks 4.95689 0.0 12.1869    
cufflinks 19.5444 0.0 43.5155   High

0 Strain