Gene : Eucgr.K03542 E. grandis v2.0
Defline:  (1 of 1) PTHR11361:SF89 - DNA MISMATCH REPAIR PROTEIN MSH6 Genomic Order:  2969
Name:  ? Eucgr.K03542 Secondary Identifier:  ? PAC:32066674
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03542 0.5kb upstream 0.5kb upstream 11085 true Chr11: 43873780-43884864 Eucalyptus grandis
Eucgr.K03542 0.5kb upstream 0.5kb upstream 500 false Chr11: 43884365-43884864 Eucalyptus grandis
Eucgr.K03542 0.5kb downstream 0.5kb downstream 11085 true Chr11: 43873280-43884364 Eucalyptus grandis
Eucgr.K03542 0.5kb downstream 0.5kb downstream 500 false Chr11: 43873280-43873779 Eucalyptus grandis
Eucgr.K03542 1.0kb upstream 1.0kb upstream 11585 true Chr11: 43873780-43885364 Eucalyptus grandis
Eucgr.K03542 1.0kb upstream 1.0kb upstream 1000 false Chr11: 43884365-43885364 Eucalyptus grandis
Eucgr.K03542 1.0kb downstream 1.0kb downstream 11585 true Chr11: 43872780-43884364 Eucalyptus grandis
Eucgr.K03542 1.0kb downstream 1.0kb downstream 1000 false Chr11: 43872780-43873779 Eucalyptus grandis
Eucgr.K03542 2.0kb upstream 2.0kb upstream 12585 true Chr11: 43873780-43886364 Eucalyptus grandis
Eucgr.K03542 2.0kb upstream 2.0kb upstream 2000 false Chr11: 43884365-43886364 Eucalyptus grandis
Eucgr.K03542 2.0kb downstream 2.0kb downstream 12585 true Chr11: 43871780-43884364 Eucalyptus grandis
Eucgr.K03542 2.0kb downstream 2.0kb downstream 2000 false Chr11: 43871780-43873779 Eucalyptus grandis
Eucgr.K03542 5.0kb upstream 5.0kb upstream 15585 true Chr11: 43873780-43889364 Eucalyptus grandis
Eucgr.K03542 5.0kb upstream 5.0kb upstream 5000 false Chr11: 43884365-43889364 Eucalyptus grandis
Eucgr.K03542 5.0kb downstream 5.0kb downstream 15585 true Chr11: 43868780-43884364 Eucalyptus grandis
Eucgr.K03542 5.0kb downstream 5.0kb downstream 5000 false Chr11: 43868780-43873779 Eucalyptus grandis
Eucgr.K03542 10.0kb upstream 10.0kb upstream 20585 true Chr11: 43873780-43894364 Eucalyptus grandis
Eucgr.K03542 10.0kb upstream 10.0kb upstream 10000 false Chr11: 43884365-43894364 Eucalyptus grandis
Eucgr.K03542 10.0kb downstream 10.0kb downstream 20585 true Chr11: 43863780-43884364 Eucalyptus grandis
Eucgr.K03542 10.0kb downstream 10.0kb downstream 10000 false Chr11: 43863780-43873779 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062676 5270 Rosid View MSA
123736808 5271 Pentapetalae View MSA
122787445 5272 Eudicot View MSA
122041770 5273 Angiosperm View MSA
121347464 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.30255 0.0 7.62602    
cufflinks 2.21082 0.0 5.26781   Low
cufflinks 4.11343 0.0 9.33662   High
cufflinks 2.86278 0.0 6.64778    
cufflinks 2.8052 0.0 6.55267    
cufflinks 3.32302 0.0 7.68125    

0 Strain