Gene : Eucgr.K03385 E. grandis v2.0
Defline:  (1 of 4) PTHR11088:SF30 - ADENYLATE ISOPENTENYLTRANSFERASE 3, CHLOROPLASTIC Genomic Order:  2824
Name:  ? Eucgr.K03385 Secondary Identifier:  ? PAC:32067984
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-2681 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03385 0.5kb upstream 0.5kb upstream 1712 true Chr11: 42066913-42068624 Eucalyptus grandis
Eucgr.K03385 0.5kb upstream 0.5kb upstream 500 false Chr11: 42066913-42067412 Eucalyptus grandis
Eucgr.K03385 0.5kb downstream 0.5kb downstream 1712 true Chr11: 42067413-42069124 Eucalyptus grandis
Eucgr.K03385 0.5kb downstream 0.5kb downstream 500 false Chr11: 42068625-42069124 Eucalyptus grandis
Eucgr.K03385 1.0kb upstream 1.0kb upstream 2212 true Chr11: 42066413-42068624 Eucalyptus grandis
Eucgr.K03385 1.0kb upstream 1.0kb upstream 1000 false Chr11: 42066413-42067412 Eucalyptus grandis
Eucgr.K03385 1.0kb downstream 1.0kb downstream 2212 true Chr11: 42067413-42069624 Eucalyptus grandis
Eucgr.K03385 1.0kb downstream 1.0kb downstream 1000 false Chr11: 42068625-42069624 Eucalyptus grandis
Eucgr.K03385 2.0kb upstream 2.0kb upstream 3212 true Chr11: 42065413-42068624 Eucalyptus grandis
Eucgr.K03385 2.0kb upstream 2.0kb upstream 2000 false Chr11: 42065413-42067412 Eucalyptus grandis
Eucgr.K03385 2.0kb downstream 2.0kb downstream 3212 true Chr11: 42067413-42070624 Eucalyptus grandis
Eucgr.K03385 2.0kb downstream 2.0kb downstream 2000 false Chr11: 42068625-42070624 Eucalyptus grandis
Eucgr.K03385 5.0kb upstream 5.0kb upstream 6212 true Chr11: 42062413-42068624 Eucalyptus grandis
Eucgr.K03385 5.0kb upstream 5.0kb upstream 5000 false Chr11: 42062413-42067412 Eucalyptus grandis
Eucgr.K03385 5.0kb downstream 5.0kb downstream 6212 true Chr11: 42067413-42073624 Eucalyptus grandis
Eucgr.K03385 5.0kb downstream 5.0kb downstream 5000 false Chr11: 42068625-42073624 Eucalyptus grandis
Eucgr.K03385 10.0kb upstream 10.0kb upstream 11212 true Chr11: 42057413-42068624 Eucalyptus grandis
Eucgr.K03385 10.0kb upstream 10.0kb upstream 10000 false Chr11: 42057413-42067412 Eucalyptus grandis
Eucgr.K03385 10.0kb downstream 10.0kb downstream 11212 true Chr11: 42067413-42078624 Eucalyptus grandis
Eucgr.K03385 10.0kb downstream 10.0kb downstream 10000 false Chr11: 42068625-42078624 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062328 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.25219 0.0 13.6376    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.35559 0.0 9.15448    
cufflinks 0.490419 0.0 1.68397   Low
cufflinks 0.51792 0.0 1.75335 Low Low
cufflinks 5.06086 0.0 13.1653    

0 Strain