Gene : Eucgr.K03328 E. grandis v2.0
Defline:  (1 of 1) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  2777
Name:  ? Eucgr.K03328 Secondary Identifier:  ? PAC:32069468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03328 0.5kb upstream 0.5kb upstream 7103 true Chr11: 41677046-41684148 Eucalyptus grandis
Eucgr.K03328 0.5kb upstream 0.5kb upstream 500 false Chr11: 41683649-41684148 Eucalyptus grandis
Eucgr.K03328 0.5kb downstream 0.5kb downstream 7103 true Chr11: 41676546-41683648 Eucalyptus grandis
Eucgr.K03328 0.5kb downstream 0.5kb downstream 500 false Chr11: 41676546-41677045 Eucalyptus grandis
Eucgr.K03328 1.0kb upstream 1.0kb upstream 7603 true Chr11: 41677046-41684648 Eucalyptus grandis
Eucgr.K03328 1.0kb upstream 1.0kb upstream 1000 false Chr11: 41683649-41684648 Eucalyptus grandis
Eucgr.K03328 1.0kb downstream 1.0kb downstream 7603 true Chr11: 41676046-41683648 Eucalyptus grandis
Eucgr.K03328 1.0kb downstream 1.0kb downstream 1000 false Chr11: 41676046-41677045 Eucalyptus grandis
Eucgr.K03328 2.0kb upstream 2.0kb upstream 8603 true Chr11: 41677046-41685648 Eucalyptus grandis
Eucgr.K03328 2.0kb upstream 2.0kb upstream 2000 false Chr11: 41683649-41685648 Eucalyptus grandis
Eucgr.K03328 2.0kb downstream 2.0kb downstream 8603 true Chr11: 41675046-41683648 Eucalyptus grandis
Eucgr.K03328 2.0kb downstream 2.0kb downstream 2000 false Chr11: 41675046-41677045 Eucalyptus grandis
Eucgr.K03328 5.0kb upstream 5.0kb upstream 11603 true Chr11: 41677046-41688648 Eucalyptus grandis
Eucgr.K03328 5.0kb upstream 5.0kb upstream 5000 false Chr11: 41683649-41688648 Eucalyptus grandis
Eucgr.K03328 5.0kb downstream 5.0kb downstream 11603 true Chr11: 41672046-41683648 Eucalyptus grandis
Eucgr.K03328 5.0kb downstream 5.0kb downstream 5000 false Chr11: 41672046-41677045 Eucalyptus grandis
Eucgr.K03328 10.0kb upstream 10.0kb upstream 16603 true Chr11: 41677046-41693648 Eucalyptus grandis
Eucgr.K03328 10.0kb upstream 10.0kb upstream 10000 false Chr11: 41683649-41693648 Eucalyptus grandis
Eucgr.K03328 10.0kb downstream 10.0kb downstream 16603 true Chr11: 41667046-41683648 Eucalyptus grandis
Eucgr.K03328 10.0kb downstream 10.0kb downstream 10000 false Chr11: 41667046-41677045 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.3894 0.0 43.957    
cufflinks 65.3867 0.0 200.48 High  
cufflinks 27.646 0.0 75.7584 High  
cufflinks 84.2747 0.0 257.585 High High
cufflinks 46.3154 0.0 124.852 High  
cufflinks 16.2902 0.0 36.582   Low

0 Strain