Gene : Eucgr.K03203 E. grandis v2.0
Defline:  (1 of 10) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2660
Name:  ? Eucgr.K03203 Secondary Identifier:  ? PAC:32067058
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03203 0.5kb upstream 0.5kb upstream 5679 true Chr11: 39970691-39976369 Eucalyptus grandis
Eucgr.K03203 0.5kb upstream 0.5kb upstream 500 false Chr11: 39975870-39976369 Eucalyptus grandis
Eucgr.K03203 0.5kb downstream 0.5kb downstream 5679 true Chr11: 39970191-39975869 Eucalyptus grandis
Eucgr.K03203 0.5kb downstream 0.5kb downstream 500 false Chr11: 39970191-39970690 Eucalyptus grandis
Eucgr.K03203 1.0kb upstream 1.0kb upstream 6179 true Chr11: 39970691-39976869 Eucalyptus grandis
Eucgr.K03203 1.0kb upstream 1.0kb upstream 1000 false Chr11: 39975870-39976869 Eucalyptus grandis
Eucgr.K03203 1.0kb downstream 1.0kb downstream 6179 true Chr11: 39969691-39975869 Eucalyptus grandis
Eucgr.K03203 1.0kb downstream 1.0kb downstream 1000 false Chr11: 39969691-39970690 Eucalyptus grandis
Eucgr.K03203 2.0kb upstream 2.0kb upstream 7179 true Chr11: 39970691-39977869 Eucalyptus grandis
Eucgr.K03203 2.0kb upstream 2.0kb upstream 2000 false Chr11: 39975870-39977869 Eucalyptus grandis
Eucgr.K03203 2.0kb downstream 2.0kb downstream 7179 true Chr11: 39968691-39975869 Eucalyptus grandis
Eucgr.K03203 2.0kb downstream 2.0kb downstream 2000 false Chr11: 39968691-39970690 Eucalyptus grandis
Eucgr.K03203 5.0kb upstream 5.0kb upstream 10179 true Chr11: 39970691-39980869 Eucalyptus grandis
Eucgr.K03203 5.0kb upstream 5.0kb upstream 5000 false Chr11: 39975870-39980869 Eucalyptus grandis
Eucgr.K03203 5.0kb downstream 5.0kb downstream 10179 true Chr11: 39965691-39975869 Eucalyptus grandis
Eucgr.K03203 5.0kb downstream 5.0kb downstream 5000 false Chr11: 39965691-39970690 Eucalyptus grandis
Eucgr.K03203 10.0kb upstream 10.0kb upstream 15179 true Chr11: 39970691-39985869 Eucalyptus grandis
Eucgr.K03203 10.0kb upstream 10.0kb upstream 10000 false Chr11: 39975870-39985869 Eucalyptus grandis
Eucgr.K03203 10.0kb downstream 10.0kb downstream 15179 true Chr11: 39960691-39975869 Eucalyptus grandis
Eucgr.K03203 10.0kb downstream 10.0kb downstream 10000 false Chr11: 39960691-39970690 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068015 5270 Rosid View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.40633 0.0 7.91526    
cufflinks 0.679279 0.0 3.12479 Low  
cufflinks 2.11089 0.0 6.79762    
cufflinks 0.33635 0.0 1.7805 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.17135 0.0 13.0563   High

0 Strain