Gene : Eucgr.K03171 E. grandis v2.0
Defline:  (1 of 1) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Genomic Order:  2633
Name:  ? Eucgr.K03171 Secondary Identifier:  ? PAC:32069324
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5097 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03171 0.5kb upstream 0.5kb upstream 4415 true Chr11: 39719149-39723563 Eucalyptus grandis
Eucgr.K03171 0.5kb upstream 0.5kb upstream 500 false Chr11: 39723064-39723563 Eucalyptus grandis
Eucgr.K03171 0.5kb downstream 0.5kb downstream 4415 true Chr11: 39718649-39723063 Eucalyptus grandis
Eucgr.K03171 0.5kb downstream 0.5kb downstream 500 false Chr11: 39718649-39719148 Eucalyptus grandis
Eucgr.K03171 1.0kb upstream 1.0kb upstream 4915 true Chr11: 39719149-39724063 Eucalyptus grandis
Eucgr.K03171 1.0kb upstream 1.0kb upstream 1000 false Chr11: 39723064-39724063 Eucalyptus grandis
Eucgr.K03171 1.0kb downstream 1.0kb downstream 4915 true Chr11: 39718149-39723063 Eucalyptus grandis
Eucgr.K03171 1.0kb downstream 1.0kb downstream 1000 false Chr11: 39718149-39719148 Eucalyptus grandis
Eucgr.K03171 2.0kb upstream 2.0kb upstream 5915 true Chr11: 39719149-39725063 Eucalyptus grandis
Eucgr.K03171 2.0kb upstream 2.0kb upstream 2000 false Chr11: 39723064-39725063 Eucalyptus grandis
Eucgr.K03171 2.0kb downstream 2.0kb downstream 5915 true Chr11: 39717149-39723063 Eucalyptus grandis
Eucgr.K03171 2.0kb downstream 2.0kb downstream 2000 false Chr11: 39717149-39719148 Eucalyptus grandis
Eucgr.K03171 5.0kb upstream 5.0kb upstream 8915 true Chr11: 39719149-39728063 Eucalyptus grandis
Eucgr.K03171 5.0kb upstream 5.0kb upstream 5000 false Chr11: 39723064-39728063 Eucalyptus grandis
Eucgr.K03171 5.0kb downstream 5.0kb downstream 8915 true Chr11: 39714149-39723063 Eucalyptus grandis
Eucgr.K03171 5.0kb downstream 5.0kb downstream 5000 false Chr11: 39714149-39719148 Eucalyptus grandis
Eucgr.K03171 10.0kb upstream 10.0kb upstream 13915 true Chr11: 39719149-39733063 Eucalyptus grandis
Eucgr.K03171 10.0kb upstream 10.0kb upstream 10000 false Chr11: 39723064-39733063 Eucalyptus grandis
Eucgr.K03171 10.0kb downstream 10.0kb downstream 13915 true Chr11: 39709149-39723063 Eucalyptus grandis
Eucgr.K03171 10.0kb downstream 10.0kb downstream 10000 false Chr11: 39709149-39719148 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.021 0.0 110.755 High High
cufflinks 26.6065 0.0 59.9212   Low
cufflinks 34.6651 0.0 85.9589 High  
cufflinks 30.5933 0.0 72.2926    
cufflinks 32.5335 0.0 72.9375    
cufflinks 35.7683 0.0 80.6769 High  

0 Strain