Gene : Eucgr.L02847 E. grandis v2.0
Defline:  (1 of 80) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  2
Name:  ? Eucgr.L02847 Secondary Identifier:  ? PAC:32052470
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02847 0.5kb upstream 0.5kb upstream 1217 true scaffold_1476: 8398-9614 Eucalyptus grandis
Eucgr.L02847 0.5kb upstream 0.5kb upstream 500 false scaffold_1476: 9115-9614 Eucalyptus grandis
Eucgr.L02847 0.5kb downstream 0.5kb downstream 1217 true scaffold_1476: 7898-9114 Eucalyptus grandis
Eucgr.L02847 0.5kb downstream 0.5kb downstream 500 false scaffold_1476: 7898-8397 Eucalyptus grandis
Eucgr.L02847 1.0kb upstream 1.0kb upstream 1717 true scaffold_1476: 8398-10114 Eucalyptus grandis
Eucgr.L02847 1.0kb upstream 1.0kb upstream 1000 false scaffold_1476: 9115-10114 Eucalyptus grandis
Eucgr.L02847 1.0kb downstream 1.0kb downstream 1717 true scaffold_1476: 7398-9114 Eucalyptus grandis
Eucgr.L02847 1.0kb downstream 1.0kb downstream 1000 false scaffold_1476: 7398-8397 Eucalyptus grandis
Eucgr.L02847 2.0kb upstream 2.0kb upstream 1826 true scaffold_1476: 8398-10223 Eucalyptus grandis
Eucgr.L02847 2.0kb upstream 2.0kb upstream 1109 false scaffold_1476: 9115-10223 Eucalyptus grandis
Eucgr.L02847 2.0kb downstream 2.0kb downstream 2717 true scaffold_1476: 6398-9114 Eucalyptus grandis
Eucgr.L02847 2.0kb downstream 2.0kb downstream 2000 false scaffold_1476: 6398-8397 Eucalyptus grandis
Eucgr.L02847 5.0kb upstream 5.0kb upstream 1826 true scaffold_1476: 8398-10223 Eucalyptus grandis
Eucgr.L02847 5.0kb upstream 5.0kb upstream 1109 false scaffold_1476: 9115-10223 Eucalyptus grandis
Eucgr.L02847 5.0kb downstream 5.0kb downstream 5717 true scaffold_1476: 3398-9114 Eucalyptus grandis
Eucgr.L02847 5.0kb downstream 5.0kb downstream 5000 false scaffold_1476: 3398-8397 Eucalyptus grandis
Eucgr.L02847 10.0kb upstream 10.0kb upstream 1826 true scaffold_1476: 8398-10223 Eucalyptus grandis
Eucgr.L02847 10.0kb upstream 10.0kb upstream 1109 false scaffold_1476: 9115-10223 Eucalyptus grandis
Eucgr.L02847 10.0kb downstream 10.0kb downstream 9114 true scaffold_1476: 1-9114 Eucalyptus grandis
Eucgr.L02847 10.0kb downstream 10.0kb downstream 8397 false scaffold_1476: 1-8397 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780155 5273 Angiosperm View MSA
124074311 5270 Rosid View MSA
123745303 5271 Pentapetalae View MSA
122771446 5272 Eudicot View MSA
121051779 5274 Embryophyte View MSA
123091853 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.07628 0.0 6.19428   Low
cufflinks 133.662 0.0 296.851 High  
cufflinks 3.0649 0.0 8.82498    
cufflinks 51.3898 0.0 115.018 High  
cufflinks 86.9366 0.0 192.26 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain