Gene : Eucgr.L02747 E. grandis v2.0
Defline:  (1 of 4) PTHR12197:SF173 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  1
Name:  ? Eucgr.L02747 Secondary Identifier:  ? PAC:32073786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02747 0.5kb upstream 0.5kb upstream 3493 true scaffold_1309: 4555-8047 Eucalyptus grandis
Eucgr.L02747 0.5kb upstream 0.5kb upstream 500 false scaffold_1309: 4555-5054 Eucalyptus grandis
Eucgr.L02747 0.5kb downstream 0.5kb downstream 3493 true scaffold_1309: 5055-8547 Eucalyptus grandis
Eucgr.L02747 0.5kb downstream 0.5kb downstream 500 false scaffold_1309: 8048-8547 Eucalyptus grandis
Eucgr.L02747 1.0kb upstream 1.0kb upstream 3993 true scaffold_1309: 4055-8047 Eucalyptus grandis
Eucgr.L02747 1.0kb upstream 1.0kb upstream 1000 false scaffold_1309: 4055-5054 Eucalyptus grandis
Eucgr.L02747 1.0kb downstream 1.0kb downstream 3993 true scaffold_1309: 5055-9047 Eucalyptus grandis
Eucgr.L02747 1.0kb downstream 1.0kb downstream 1000 false scaffold_1309: 8048-9047 Eucalyptus grandis
Eucgr.L02747 2.0kb upstream 2.0kb upstream 4993 true scaffold_1309: 3055-8047 Eucalyptus grandis
Eucgr.L02747 2.0kb upstream 2.0kb upstream 2000 false scaffold_1309: 3055-5054 Eucalyptus grandis
Eucgr.L02747 2.0kb downstream 2.0kb downstream 4993 true scaffold_1309: 5055-10047 Eucalyptus grandis
Eucgr.L02747 2.0kb downstream 2.0kb downstream 2000 false scaffold_1309: 8048-10047 Eucalyptus grandis
Eucgr.L02747 5.0kb upstream 5.0kb upstream 7993 true scaffold_1309: 55-8047 Eucalyptus grandis
Eucgr.L02747 5.0kb upstream 5.0kb upstream 5000 false scaffold_1309: 55-5054 Eucalyptus grandis
Eucgr.L02747 5.0kb downstream 5.0kb downstream 6347 true scaffold_1309: 5055-11401 Eucalyptus grandis
Eucgr.L02747 5.0kb downstream 5.0kb downstream 3354 false scaffold_1309: 8048-11401 Eucalyptus grandis
Eucgr.L02747 10.0kb upstream 10.0kb upstream 8047 true scaffold_1309: 1-8047 Eucalyptus grandis
Eucgr.L02747 10.0kb upstream 10.0kb upstream 5054 false scaffold_1309: 1-5054 Eucalyptus grandis
Eucgr.L02747 10.0kb downstream 10.0kb downstream 6347 true scaffold_1309: 5055-11401 Eucalyptus grandis
Eucgr.L02747 10.0kb downstream 10.0kb downstream 3354 false scaffold_1309: 8048-11401 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072039 5270 Rosid View MSA
123748863 5271 Pentapetalae View MSA
122787018 5272 Eudicot View MSA
122047928 5273 Angiosperm View MSA
121346419 5274 Embryophyte View MSA
123428850 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047212 0.0 0.312245 Low  
cufflinks 0.303038 0.0 1.08156 Low High
cufflinks 0.045365 0.0 0.296527 Low  
cufflinks 0.00505341 0.0 0.0866961 Low Low
cufflinks 0.132289 0.0 0.565695 Low  
cufflinks 0.0976977 0.0 0.501389 Low  

0 Strain