Gene : Eucgr.L00085 E. grandis v2.0
Defline:  (1 of 2) PTHR12786:SF1 - PROTEIN SDE2 HOMOLOG Genomic Order:  15
Name:  ? Eucgr.L00085 Secondary Identifier:  ? PAC:32040343
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L00085 0.5kb upstream 0.5kb upstream 2149 true scaffold_12: 819912-822060 Eucalyptus grandis
Eucgr.L00085 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 819912-820411 Eucalyptus grandis
Eucgr.L00085 0.5kb downstream 0.5kb downstream 2149 true scaffold_12: 820412-822560 Eucalyptus grandis
Eucgr.L00085 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 822061-822560 Eucalyptus grandis
Eucgr.L00085 1.0kb upstream 1.0kb upstream 2649 true scaffold_12: 819412-822060 Eucalyptus grandis
Eucgr.L00085 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 819412-820411 Eucalyptus grandis
Eucgr.L00085 1.0kb downstream 1.0kb downstream 2649 true scaffold_12: 820412-823060 Eucalyptus grandis
Eucgr.L00085 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 822061-823060 Eucalyptus grandis
Eucgr.L00085 2.0kb upstream 2.0kb upstream 3649 true scaffold_12: 818412-822060 Eucalyptus grandis
Eucgr.L00085 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 818412-820411 Eucalyptus grandis
Eucgr.L00085 2.0kb downstream 2.0kb downstream 3649 true scaffold_12: 820412-824060 Eucalyptus grandis
Eucgr.L00085 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 822061-824060 Eucalyptus grandis
Eucgr.L00085 5.0kb upstream 5.0kb upstream 6649 true scaffold_12: 815412-822060 Eucalyptus grandis
Eucgr.L00085 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 815412-820411 Eucalyptus grandis
Eucgr.L00085 5.0kb downstream 5.0kb downstream 6649 true scaffold_12: 820412-827060 Eucalyptus grandis
Eucgr.L00085 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 822061-827060 Eucalyptus grandis
Eucgr.L00085 10.0kb upstream 10.0kb upstream 11649 true scaffold_12: 810412-822060 Eucalyptus grandis
Eucgr.L00085 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 810412-820411 Eucalyptus grandis
Eucgr.L00085 10.0kb downstream 10.0kb downstream 11649 true scaffold_12: 820412-832060 Eucalyptus grandis
Eucgr.L00085 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 822061-832060 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060916 5270 Rosid View MSA
123743945 5271 Pentapetalae View MSA
122790858 5272 Eudicot View MSA
122047648 5273 Angiosperm View MSA
121345169 5274 Embryophyte View MSA
123427367 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.33746 0.0 21.3584   High
cufflinks 6.97823 0.0 16.3696   Low
cufflinks 8.07186 0.0 18.6375    
cufflinks 8.69771 0.0 19.9405    
cufflinks 8.71636 0.0 20.0708    
cufflinks 8.19199 0.0 18.8903    

0 Strain