Gene : Eucgr.L02616 E. grandis v2.0
Defline:  (1 of 2) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  2
Name:  ? Eucgr.L02616 Secondary Identifier:  ? PAC:32049439
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02616 0.5kb upstream 0.5kb upstream 4162 true scaffold_1106: 5678-9839 Eucalyptus grandis
Eucgr.L02616 0.5kb upstream 0.5kb upstream 500 false scaffold_1106: 9340-9839 Eucalyptus grandis
Eucgr.L02616 0.5kb downstream 0.5kb downstream 4162 true scaffold_1106: 5178-9339 Eucalyptus grandis
Eucgr.L02616 0.5kb downstream 0.5kb downstream 500 false scaffold_1106: 5178-5677 Eucalyptus grandis
Eucgr.L02616 1.0kb upstream 1.0kb upstream 4662 true scaffold_1106: 5678-10339 Eucalyptus grandis
Eucgr.L02616 1.0kb upstream 1.0kb upstream 1000 false scaffold_1106: 9340-10339 Eucalyptus grandis
Eucgr.L02616 1.0kb downstream 1.0kb downstream 4662 true scaffold_1106: 4678-9339 Eucalyptus grandis
Eucgr.L02616 1.0kb downstream 1.0kb downstream 1000 false scaffold_1106: 4678-5677 Eucalyptus grandis
Eucgr.L02616 2.0kb upstream 2.0kb upstream 5662 true scaffold_1106: 5678-11339 Eucalyptus grandis
Eucgr.L02616 2.0kb upstream 2.0kb upstream 2000 false scaffold_1106: 9340-11339 Eucalyptus grandis
Eucgr.L02616 2.0kb downstream 2.0kb downstream 5662 true scaffold_1106: 3678-9339 Eucalyptus grandis
Eucgr.L02616 2.0kb downstream 2.0kb downstream 2000 false scaffold_1106: 3678-5677 Eucalyptus grandis
Eucgr.L02616 5.0kb upstream 5.0kb upstream 7346 true scaffold_1106: 5678-13023 Eucalyptus grandis
Eucgr.L02616 5.0kb upstream 5.0kb upstream 3684 false scaffold_1106: 9340-13023 Eucalyptus grandis
Eucgr.L02616 5.0kb downstream 5.0kb downstream 8662 true scaffold_1106: 678-9339 Eucalyptus grandis
Eucgr.L02616 5.0kb downstream 5.0kb downstream 5000 false scaffold_1106: 678-5677 Eucalyptus grandis
Eucgr.L02616 10.0kb upstream 10.0kb upstream 7346 true scaffold_1106: 5678-13023 Eucalyptus grandis
Eucgr.L02616 10.0kb upstream 10.0kb upstream 3684 false scaffold_1106: 9340-13023 Eucalyptus grandis
Eucgr.L02616 10.0kb downstream 10.0kb downstream 9339 true scaffold_1106: 1-9339 Eucalyptus grandis
Eucgr.L02616 10.0kb downstream 10.0kb downstream 5677 false scaffold_1106: 1-5677 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124075033 5270 Rosid View MSA
123746052 5271 Pentapetalae View MSA
122771756 5272 Eudicot View MSA
122050637 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121350129 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.98948 0.0 5.38696   Low
cufflinks 8.73878 0.0 20.3243    
cufflinks 4.36092 0.0 10.8678    
cufflinks 9.68257 0.0 22.2999   High
cufflinks 7.45846 0.0 17.6225    
cufflinks 2.30336 0.0 6.18658   Low

0 Strain