Gene : Eucgr.L03318 E. grandis v2.0
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  2
Name:  ? Eucgr.L03318 Secondary Identifier:  ? PAC:32052365
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7560 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L03318 0.5kb upstream 0.5kb upstream 2377 true scaffold_2664: 2985-5361 Eucalyptus grandis
Eucgr.L03318 0.5kb upstream 0.5kb upstream 500 false scaffold_2664: 2985-3484 Eucalyptus grandis
Eucgr.L03318 0.5kb downstream 0.5kb downstream 1903 true scaffold_2664: 3485-5387 Eucalyptus grandis
Eucgr.L03318 0.5kb downstream 0.5kb downstream 26 false scaffold_2664: 5362-5387 Eucalyptus grandis
Eucgr.L03318 1.0kb upstream 1.0kb upstream 2877 true scaffold_2664: 2485-5361 Eucalyptus grandis
Eucgr.L03318 1.0kb upstream 1.0kb upstream 1000 false scaffold_2664: 2485-3484 Eucalyptus grandis
Eucgr.L03318 1.0kb downstream 1.0kb downstream 1903 true scaffold_2664: 3485-5387 Eucalyptus grandis
Eucgr.L03318 1.0kb downstream 1.0kb downstream 26 false scaffold_2664: 5362-5387 Eucalyptus grandis
Eucgr.L03318 2.0kb upstream 2.0kb upstream 3877 true scaffold_2664: 1485-5361 Eucalyptus grandis
Eucgr.L03318 2.0kb upstream 2.0kb upstream 2000 false scaffold_2664: 1485-3484 Eucalyptus grandis
Eucgr.L03318 2.0kb downstream 2.0kb downstream 1903 true scaffold_2664: 3485-5387 Eucalyptus grandis
Eucgr.L03318 2.0kb downstream 2.0kb downstream 26 false scaffold_2664: 5362-5387 Eucalyptus grandis
Eucgr.L03318 5.0kb upstream 5.0kb upstream 5361 true scaffold_2664: 1-5361 Eucalyptus grandis
Eucgr.L03318 5.0kb upstream 5.0kb upstream 3484 false scaffold_2664: 1-3484 Eucalyptus grandis
Eucgr.L03318 5.0kb downstream 5.0kb downstream 1903 true scaffold_2664: 3485-5387 Eucalyptus grandis
Eucgr.L03318 5.0kb downstream 5.0kb downstream 26 false scaffold_2664: 5362-5387 Eucalyptus grandis
Eucgr.L03318 10.0kb upstream 10.0kb upstream 5361 true scaffold_2664: 1-5361 Eucalyptus grandis
Eucgr.L03318 10.0kb upstream 10.0kb upstream 3484 false scaffold_2664: 1-3484 Eucalyptus grandis
Eucgr.L03318 10.0kb downstream 10.0kb downstream 1903 true scaffold_2664: 3485-5387 Eucalyptus grandis
Eucgr.L03318 10.0kb downstream 10.0kb downstream 26 false scaffold_2664: 5362-5387 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3615 0.0 36.0163    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 9.08565 0.0 24.0874    
cufflinks 1.83626 0.0 5.81321   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 6.36661 0.0 17.1546    

0 Strain