Gene : Eucgr.L01391 E. grandis v2.0
Defline:  (1 of 9) PTHR13301:SF60 - CELLULOSE SYNTHASE-LIKE PROTEIN E1 Genomic Order:  4
Name:  ? Eucgr.L01391 Secondary Identifier:  ? PAC:32027759
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01391 0.5kb upstream 0.5kb upstream 2145 true scaffold_193: 28980-31124 Eucalyptus grandis
Eucgr.L01391 0.5kb upstream 0.5kb upstream 500 false scaffold_193: 30625-31124 Eucalyptus grandis
Eucgr.L01391 0.5kb downstream 0.5kb downstream 2145 true scaffold_193: 28480-30624 Eucalyptus grandis
Eucgr.L01391 0.5kb downstream 0.5kb downstream 500 false scaffold_193: 28480-28979 Eucalyptus grandis
Eucgr.L01391 1.0kb upstream 1.0kb upstream 2645 true scaffold_193: 28980-31624 Eucalyptus grandis
Eucgr.L01391 1.0kb upstream 1.0kb upstream 1000 false scaffold_193: 30625-31624 Eucalyptus grandis
Eucgr.L01391 1.0kb downstream 1.0kb downstream 2645 true scaffold_193: 27980-30624 Eucalyptus grandis
Eucgr.L01391 1.0kb downstream 1.0kb downstream 1000 false scaffold_193: 27980-28979 Eucalyptus grandis
Eucgr.L01391 2.0kb upstream 2.0kb upstream 3645 true scaffold_193: 28980-32624 Eucalyptus grandis
Eucgr.L01391 2.0kb upstream 2.0kb upstream 2000 false scaffold_193: 30625-32624 Eucalyptus grandis
Eucgr.L01391 2.0kb downstream 2.0kb downstream 3645 true scaffold_193: 26980-30624 Eucalyptus grandis
Eucgr.L01391 2.0kb downstream 2.0kb downstream 2000 false scaffold_193: 26980-28979 Eucalyptus grandis
Eucgr.L01391 5.0kb upstream 5.0kb upstream 6645 true scaffold_193: 28980-35624 Eucalyptus grandis
Eucgr.L01391 5.0kb upstream 5.0kb upstream 5000 false scaffold_193: 30625-35624 Eucalyptus grandis
Eucgr.L01391 5.0kb downstream 5.0kb downstream 6645 true scaffold_193: 23980-30624 Eucalyptus grandis
Eucgr.L01391 5.0kb downstream 5.0kb downstream 5000 false scaffold_193: 23980-28979 Eucalyptus grandis
Eucgr.L01391 10.0kb upstream 10.0kb upstream 11645 true scaffold_193: 28980-40624 Eucalyptus grandis
Eucgr.L01391 10.0kb upstream 10.0kb upstream 10000 false scaffold_193: 30625-40624 Eucalyptus grandis
Eucgr.L01391 10.0kb downstream 10.0kb downstream 11645 true scaffold_193: 18980-30624 Eucalyptus grandis
Eucgr.L01391 10.0kb downstream 10.0kb downstream 10000 false scaffold_193: 18980-28979 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.253068 0.0 1.08059 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0132314 0.0 0.202444 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain