Gene : Eucgr.L02995 E. grandis v2.0
Defline:  (1 of 2) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  1
Name:  ? Eucgr.L02995 Secondary Identifier:  ? PAC:32040417
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02995 0.5kb upstream 0.5kb upstream 6670 true scaffold_1763: 236-6905 Eucalyptus grandis
Eucgr.L02995 0.5kb upstream 0.5kb upstream 500 false scaffold_1763: 6406-6905 Eucalyptus grandis
Eucgr.L02995 0.5kb downstream 0.5kb downstream 6405 true scaffold_1763: 1-6405 Eucalyptus grandis
Eucgr.L02995 0.5kb downstream 0.5kb downstream 235 false scaffold_1763: 1-235 Eucalyptus grandis
Eucgr.L02995 1.0kb upstream 1.0kb upstream 7170 true scaffold_1763: 236-7405 Eucalyptus grandis
Eucgr.L02995 1.0kb upstream 1.0kb upstream 1000 false scaffold_1763: 6406-7405 Eucalyptus grandis
Eucgr.L02995 1.0kb downstream 1.0kb downstream 6405 true scaffold_1763: 1-6405 Eucalyptus grandis
Eucgr.L02995 1.0kb downstream 1.0kb downstream 235 false scaffold_1763: 1-235 Eucalyptus grandis
Eucgr.L02995 2.0kb upstream 2.0kb upstream 8170 true scaffold_1763: 236-8405 Eucalyptus grandis
Eucgr.L02995 2.0kb upstream 2.0kb upstream 2000 false scaffold_1763: 6406-8405 Eucalyptus grandis
Eucgr.L02995 2.0kb downstream 2.0kb downstream 6405 true scaffold_1763: 1-6405 Eucalyptus grandis
Eucgr.L02995 2.0kb downstream 2.0kb downstream 235 false scaffold_1763: 1-235 Eucalyptus grandis
Eucgr.L02995 5.0kb upstream 5.0kb upstream 8540 true scaffold_1763: 236-8775 Eucalyptus grandis
Eucgr.L02995 5.0kb upstream 5.0kb upstream 2370 false scaffold_1763: 6406-8775 Eucalyptus grandis
Eucgr.L02995 5.0kb downstream 5.0kb downstream 6405 true scaffold_1763: 1-6405 Eucalyptus grandis
Eucgr.L02995 5.0kb downstream 5.0kb downstream 235 false scaffold_1763: 1-235 Eucalyptus grandis
Eucgr.L02995 10.0kb upstream 10.0kb upstream 8540 true scaffold_1763: 236-8775 Eucalyptus grandis
Eucgr.L02995 10.0kb upstream 10.0kb upstream 2370 false scaffold_1763: 6406-8775 Eucalyptus grandis
Eucgr.L02995 10.0kb downstream 10.0kb downstream 6405 true scaffold_1763: 1-6405 Eucalyptus grandis
Eucgr.L02995 10.0kb downstream 10.0kb downstream 235 false scaffold_1763: 1-235 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.77001 0.0 21.4253   High
cufflinks 5.8553 0.0 14.8471   Low
cufflinks 6.1164 0.0 15.4992    
cufflinks 7.60738 0.0 18.8476    
cufflinks 6.75166 0.0 16.931    
cufflinks 8.67127 0.0 21.3091   High

0 Strain