Gene : Eucgr.L01800 E. grandis v2.0
Defline:  (1 of 1) PF00954//PF08276 - S-locus glycoprotein domain (S_locus_glycop) // PAN-like domain (PAN_2) Genomic Order:  3
Name:  ? Eucgr.L01800 Secondary Identifier:  ? PAC:32027531
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01800 0.5kb upstream 0.5kb upstream 1456 true scaffold_369: 51215-52670 Eucalyptus grandis
Eucgr.L01800 0.5kb upstream 0.5kb upstream 500 false scaffold_369: 51215-51714 Eucalyptus grandis
Eucgr.L01800 0.5kb downstream 0.5kb downstream 1147 true scaffold_369: 51715-52861 Eucalyptus grandis
Eucgr.L01800 0.5kb downstream 0.5kb downstream 191 false scaffold_369: 52671-52861 Eucalyptus grandis
Eucgr.L01800 1.0kb upstream 1.0kb upstream 1956 true scaffold_369: 50715-52670 Eucalyptus grandis
Eucgr.L01800 1.0kb upstream 1.0kb upstream 1000 false scaffold_369: 50715-51714 Eucalyptus grandis
Eucgr.L01800 1.0kb downstream 1.0kb downstream 1147 true scaffold_369: 51715-52861 Eucalyptus grandis
Eucgr.L01800 1.0kb downstream 1.0kb downstream 191 false scaffold_369: 52671-52861 Eucalyptus grandis
Eucgr.L01800 2.0kb upstream 2.0kb upstream 2956 true scaffold_369: 49715-52670 Eucalyptus grandis
Eucgr.L01800 2.0kb upstream 2.0kb upstream 2000 false scaffold_369: 49715-51714 Eucalyptus grandis
Eucgr.L01800 2.0kb downstream 2.0kb downstream 1147 true scaffold_369: 51715-52861 Eucalyptus grandis
Eucgr.L01800 2.0kb downstream 2.0kb downstream 191 false scaffold_369: 52671-52861 Eucalyptus grandis
Eucgr.L01800 5.0kb upstream 5.0kb upstream 5956 true scaffold_369: 46715-52670 Eucalyptus grandis
Eucgr.L01800 5.0kb upstream 5.0kb upstream 5000 false scaffold_369: 46715-51714 Eucalyptus grandis
Eucgr.L01800 5.0kb downstream 5.0kb downstream 1147 true scaffold_369: 51715-52861 Eucalyptus grandis
Eucgr.L01800 5.0kb downstream 5.0kb downstream 191 false scaffold_369: 52671-52861 Eucalyptus grandis
Eucgr.L01800 10.0kb upstream 10.0kb upstream 10956 true scaffold_369: 41715-52670 Eucalyptus grandis
Eucgr.L01800 10.0kb upstream 10.0kb upstream 10000 false scaffold_369: 41715-51714 Eucalyptus grandis
Eucgr.L01800 10.0kb downstream 10.0kb downstream 1147 true scaffold_369: 51715-52861 Eucalyptus grandis
Eucgr.L01800 10.0kb downstream 10.0kb downstream 191 false scaffold_369: 52671-52861 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074659 5270 Rosid View MSA
123753273 5271 Pentapetalae View MSA
122775025 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.53092 0.0 7.48288    
cufflinks 1.77031 0.0 5.40482    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.821558 0.0 2.76458   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain