Gene : Eucgr.L01754 E. grandis v2.0
Defline:  (1 of 2) PTHR22847:SF502 - WD40 REPEAT PROTEIN MUCILAGE-MODIFIED 1 Genomic Order:  1
Name:  ? Eucgr.L01754 Secondary Identifier:  ? PAC:32052367
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01754 0.5kb upstream 0.5kb upstream 2960 true scaffold_338: 3481-6440 Eucalyptus grandis
Eucgr.L01754 0.5kb upstream 0.5kb upstream 500 false scaffold_338: 5941-6440 Eucalyptus grandis
Eucgr.L01754 0.5kb downstream 0.5kb downstream 2960 true scaffold_338: 2981-5940 Eucalyptus grandis
Eucgr.L01754 0.5kb downstream 0.5kb downstream 500 false scaffold_338: 2981-3480 Eucalyptus grandis
Eucgr.L01754 1.0kb upstream 1.0kb upstream 3460 true scaffold_338: 3481-6940 Eucalyptus grandis
Eucgr.L01754 1.0kb upstream 1.0kb upstream 1000 false scaffold_338: 5941-6940 Eucalyptus grandis
Eucgr.L01754 1.0kb downstream 1.0kb downstream 3460 true scaffold_338: 2481-5940 Eucalyptus grandis
Eucgr.L01754 1.0kb downstream 1.0kb downstream 1000 false scaffold_338: 2481-3480 Eucalyptus grandis
Eucgr.L01754 2.0kb upstream 2.0kb upstream 4460 true scaffold_338: 3481-7940 Eucalyptus grandis
Eucgr.L01754 2.0kb upstream 2.0kb upstream 2000 false scaffold_338: 5941-7940 Eucalyptus grandis
Eucgr.L01754 2.0kb downstream 2.0kb downstream 4460 true scaffold_338: 1481-5940 Eucalyptus grandis
Eucgr.L01754 2.0kb downstream 2.0kb downstream 2000 false scaffold_338: 1481-3480 Eucalyptus grandis
Eucgr.L01754 5.0kb upstream 5.0kb upstream 7460 true scaffold_338: 3481-10940 Eucalyptus grandis
Eucgr.L01754 5.0kb upstream 5.0kb upstream 5000 false scaffold_338: 5941-10940 Eucalyptus grandis
Eucgr.L01754 5.0kb downstream 5.0kb downstream 5940 true scaffold_338: 1-5940 Eucalyptus grandis
Eucgr.L01754 5.0kb downstream 5.0kb downstream 3480 false scaffold_338: 1-3480 Eucalyptus grandis
Eucgr.L01754 10.0kb upstream 10.0kb upstream 12460 true scaffold_338: 3481-15940 Eucalyptus grandis
Eucgr.L01754 10.0kb upstream 10.0kb upstream 10000 false scaffold_338: 5941-15940 Eucalyptus grandis
Eucgr.L01754 10.0kb downstream 10.0kb downstream 5940 true scaffold_338: 1-5940 Eucalyptus grandis
Eucgr.L01754 10.0kb downstream 10.0kb downstream 3480 false scaffold_338: 1-3480 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072313 5270 Rosid View MSA
123751820 5271 Pentapetalae View MSA
122789823 5272 Eudicot View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.8835 0.0 40.4661    
cufflinks 27.5003 0.0 61.0654   High
cufflinks 14.1099 0.0 32.3993   Low
cufflinks 15.2907 0.0 34.8342    
cufflinks 18.9028 0.0 42.5934    
cufflinks 17.4633 0.0 39.6851    

0 Strain