Gene : Eucgr.L03518 E. grandis v2.0
Defline:  (1 of 9) PTHR13301:SF60 - CELLULOSE SYNTHASE-LIKE PROTEIN E1 Genomic Order:  1
Name:  ? Eucgr.L03518 Secondary Identifier:  ? PAC:32040564
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L03518 0.5kb upstream 0.5kb upstream 3143 true scaffold_3450: 600-3742 Eucalyptus grandis
Eucgr.L03518 0.5kb upstream 0.5kb upstream 500 false scaffold_3450: 3243-3742 Eucalyptus grandis
Eucgr.L03518 0.5kb downstream 0.5kb downstream 3143 true scaffold_3450: 100-3242 Eucalyptus grandis
Eucgr.L03518 0.5kb downstream 0.5kb downstream 500 false scaffold_3450: 100-599 Eucalyptus grandis
Eucgr.L03518 1.0kb upstream 1.0kb upstream 3425 true scaffold_3450: 600-4024 Eucalyptus grandis
Eucgr.L03518 1.0kb upstream 1.0kb upstream 782 false scaffold_3450: 3243-4024 Eucalyptus grandis
Eucgr.L03518 1.0kb downstream 1.0kb downstream 3242 true scaffold_3450: 1-3242 Eucalyptus grandis
Eucgr.L03518 1.0kb downstream 1.0kb downstream 599 false scaffold_3450: 1-599 Eucalyptus grandis
Eucgr.L03518 2.0kb upstream 2.0kb upstream 3425 true scaffold_3450: 600-4024 Eucalyptus grandis
Eucgr.L03518 2.0kb upstream 2.0kb upstream 782 false scaffold_3450: 3243-4024 Eucalyptus grandis
Eucgr.L03518 2.0kb downstream 2.0kb downstream 3242 true scaffold_3450: 1-3242 Eucalyptus grandis
Eucgr.L03518 2.0kb downstream 2.0kb downstream 599 false scaffold_3450: 1-599 Eucalyptus grandis
Eucgr.L03518 5.0kb upstream 5.0kb upstream 3425 true scaffold_3450: 600-4024 Eucalyptus grandis
Eucgr.L03518 5.0kb upstream 5.0kb upstream 782 false scaffold_3450: 3243-4024 Eucalyptus grandis
Eucgr.L03518 5.0kb downstream 5.0kb downstream 3242 true scaffold_3450: 1-3242 Eucalyptus grandis
Eucgr.L03518 5.0kb downstream 5.0kb downstream 599 false scaffold_3450: 1-599 Eucalyptus grandis
Eucgr.L03518 10.0kb upstream 10.0kb upstream 3425 true scaffold_3450: 600-4024 Eucalyptus grandis
Eucgr.L03518 10.0kb upstream 10.0kb upstream 782 false scaffold_3450: 3243-4024 Eucalyptus grandis
Eucgr.L03518 10.0kb downstream 10.0kb downstream 3242 true scaffold_3450: 1-3242 Eucalyptus grandis
Eucgr.L03518 10.0kb downstream 10.0kb downstream 599 false scaffold_3450: 1-599 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.70146 0.0 4.77526    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.64092 0.0 4.61323    
cufflinks 0.180133 0.0 0.663438 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.220855 0.0 0.804132 Low  

0 Strain