Gene : Eucgr.L01652 E. grandis v2.0
Defline:  (1 of 3) PTHR33447:SF2 - PROTEIN PCS-1, ISOFORM A Genomic Order:  1
Name:  ? Eucgr.L01652 Secondary Identifier:  ? PAC:32040499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6745 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01652 0.5kb upstream 0.5kb upstream 7043 true scaffold_290: 22760-29802 Eucalyptus grandis
Eucgr.L01652 0.5kb upstream 0.5kb upstream 500 false scaffold_290: 22760-23259 Eucalyptus grandis
Eucgr.L01652 0.5kb downstream 0.5kb downstream 7043 true scaffold_290: 23260-30302 Eucalyptus grandis
Eucgr.L01652 0.5kb downstream 0.5kb downstream 500 false scaffold_290: 29803-30302 Eucalyptus grandis
Eucgr.L01652 1.0kb upstream 1.0kb upstream 7543 true scaffold_290: 22260-29802 Eucalyptus grandis
Eucgr.L01652 1.0kb upstream 1.0kb upstream 1000 false scaffold_290: 22260-23259 Eucalyptus grandis
Eucgr.L01652 1.0kb downstream 1.0kb downstream 7543 true scaffold_290: 23260-30802 Eucalyptus grandis
Eucgr.L01652 1.0kb downstream 1.0kb downstream 1000 false scaffold_290: 29803-30802 Eucalyptus grandis
Eucgr.L01652 2.0kb upstream 2.0kb upstream 8543 true scaffold_290: 21260-29802 Eucalyptus grandis
Eucgr.L01652 2.0kb upstream 2.0kb upstream 2000 false scaffold_290: 21260-23259 Eucalyptus grandis
Eucgr.L01652 2.0kb downstream 2.0kb downstream 8543 true scaffold_290: 23260-31802 Eucalyptus grandis
Eucgr.L01652 2.0kb downstream 2.0kb downstream 2000 false scaffold_290: 29803-31802 Eucalyptus grandis
Eucgr.L01652 5.0kb upstream 5.0kb upstream 11543 true scaffold_290: 18260-29802 Eucalyptus grandis
Eucgr.L01652 5.0kb upstream 5.0kb upstream 5000 false scaffold_290: 18260-23259 Eucalyptus grandis
Eucgr.L01652 5.0kb downstream 5.0kb downstream 11543 true scaffold_290: 23260-34802 Eucalyptus grandis
Eucgr.L01652 5.0kb downstream 5.0kb downstream 5000 false scaffold_290: 29803-34802 Eucalyptus grandis
Eucgr.L01652 10.0kb upstream 10.0kb upstream 16543 true scaffold_290: 13260-29802 Eucalyptus grandis
Eucgr.L01652 10.0kb upstream 10.0kb upstream 10000 false scaffold_290: 13260-23259 Eucalyptus grandis
Eucgr.L01652 10.0kb downstream 10.0kb downstream 16543 true scaffold_290: 23260-39802 Eucalyptus grandis
Eucgr.L01652 10.0kb downstream 10.0kb downstream 10000 false scaffold_290: 29803-39802 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029935 5273 Angiosperm View MSA
124051540 5270 Rosid View MSA
123620201 5271 Pentapetalae View MSA
122654615 5272 Eudicot View MSA
121299186 5274 Embryophyte View MSA
123337095 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.46142 0.0 4.15125    
cufflinks 0.666809 0.0 2.04592 Low  
cufflinks 2.8151 0.0 7.45837   High
cufflinks 0.354394 0.0 1.18288 Low Low
cufflinks 0.774032 0.0 2.35568    
cufflinks 1.8841 0.0 5.25461    

0 Strain