Gene : Eucgr.L01003 E. grandis v2.0
Defline:  (1 of 3) K02109 - F-type H+-transporting ATPase subunit b (ATPF0B, atpF) Genomic Order:  1
Name:  ? Eucgr.L01003 Secondary Identifier:  ? PAC:32062383
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L01003 0.5kb upstream 0.5kb upstream 3717 true scaffold_88: 59034-62750 Eucalyptus grandis
Eucgr.L01003 0.5kb upstream 0.5kb upstream 500 false scaffold_88: 59034-59533 Eucalyptus grandis
Eucgr.L01003 0.5kb downstream 0.5kb downstream 3717 true scaffold_88: 59534-63250 Eucalyptus grandis
Eucgr.L01003 0.5kb downstream 0.5kb downstream 500 false scaffold_88: 62751-63250 Eucalyptus grandis
Eucgr.L01003 1.0kb upstream 1.0kb upstream 4217 true scaffold_88: 58534-62750 Eucalyptus grandis
Eucgr.L01003 1.0kb upstream 1.0kb upstream 1000 false scaffold_88: 58534-59533 Eucalyptus grandis
Eucgr.L01003 1.0kb downstream 1.0kb downstream 4217 true scaffold_88: 59534-63750 Eucalyptus grandis
Eucgr.L01003 1.0kb downstream 1.0kb downstream 1000 false scaffold_88: 62751-63750 Eucalyptus grandis
Eucgr.L01003 2.0kb upstream 2.0kb upstream 5217 true scaffold_88: 57534-62750 Eucalyptus grandis
Eucgr.L01003 2.0kb upstream 2.0kb upstream 2000 false scaffold_88: 57534-59533 Eucalyptus grandis
Eucgr.L01003 2.0kb downstream 2.0kb downstream 5217 true scaffold_88: 59534-64750 Eucalyptus grandis
Eucgr.L01003 2.0kb downstream 2.0kb downstream 2000 false scaffold_88: 62751-64750 Eucalyptus grandis
Eucgr.L01003 5.0kb upstream 5.0kb upstream 8217 true scaffold_88: 54534-62750 Eucalyptus grandis
Eucgr.L01003 5.0kb upstream 5.0kb upstream 5000 false scaffold_88: 54534-59533 Eucalyptus grandis
Eucgr.L01003 5.0kb downstream 5.0kb downstream 8217 true scaffold_88: 59534-67750 Eucalyptus grandis
Eucgr.L01003 5.0kb downstream 5.0kb downstream 5000 false scaffold_88: 62751-67750 Eucalyptus grandis
Eucgr.L01003 10.0kb upstream 10.0kb upstream 13217 true scaffold_88: 49534-62750 Eucalyptus grandis
Eucgr.L01003 10.0kb upstream 10.0kb upstream 10000 false scaffold_88: 49534-59533 Eucalyptus grandis
Eucgr.L01003 10.0kb downstream 10.0kb downstream 13217 true scaffold_88: 59534-72750 Eucalyptus grandis
Eucgr.L01003 10.0kb downstream 10.0kb downstream 10000 false scaffold_88: 62751-72750 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068722 5270 Rosid View MSA
123752628 5271 Pentapetalae View MSA
122791524 5272 Eudicot View MSA
122043205 5273 Angiosperm View MSA
121348620 5274 Embryophyte View MSA
123380941 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33605 0.0 3.83913   Low
cufflinks 3.53674 0.0 9.25671    
cufflinks 1.28362 0.0 3.71456   Low
cufflinks 4.94632 0.0 12.5073   High
cufflinks 5.04717 0.0 12.6998   High
cufflinks 1.99935 0.0 5.49361    

0 Strain