Gene : Eucgr.L02402 E. grandis v2.0
Defline:  (1 of 6) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  1
Name:  ? Eucgr.L02402 Secondary Identifier:  ? PAC:32073641
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02402 0.5kb upstream 0.5kb upstream 4237 true scaffold_870: 1282-5518 Eucalyptus grandis
Eucgr.L02402 0.5kb upstream 0.5kb upstream 500 false scaffold_870: 1282-1781 Eucalyptus grandis
Eucgr.L02402 0.5kb downstream 0.5kb downstream 4237 true scaffold_870: 1782-6018 Eucalyptus grandis
Eucgr.L02402 0.5kb downstream 0.5kb downstream 500 false scaffold_870: 5519-6018 Eucalyptus grandis
Eucgr.L02402 1.0kb upstream 1.0kb upstream 4737 true scaffold_870: 782-5518 Eucalyptus grandis
Eucgr.L02402 1.0kb upstream 1.0kb upstream 1000 false scaffold_870: 782-1781 Eucalyptus grandis
Eucgr.L02402 1.0kb downstream 1.0kb downstream 4737 true scaffold_870: 1782-6518 Eucalyptus grandis
Eucgr.L02402 1.0kb downstream 1.0kb downstream 1000 false scaffold_870: 5519-6518 Eucalyptus grandis
Eucgr.L02402 2.0kb upstream 2.0kb upstream 5518 true scaffold_870: 1-5518 Eucalyptus grandis
Eucgr.L02402 2.0kb upstream 2.0kb upstream 1781 false scaffold_870: 1-1781 Eucalyptus grandis
Eucgr.L02402 2.0kb downstream 2.0kb downstream 5737 true scaffold_870: 1782-7518 Eucalyptus grandis
Eucgr.L02402 2.0kb downstream 2.0kb downstream 2000 false scaffold_870: 5519-7518 Eucalyptus grandis
Eucgr.L02402 5.0kb upstream 5.0kb upstream 5518 true scaffold_870: 1-5518 Eucalyptus grandis
Eucgr.L02402 5.0kb upstream 5.0kb upstream 1781 false scaffold_870: 1-1781 Eucalyptus grandis
Eucgr.L02402 5.0kb downstream 5.0kb downstream 8737 true scaffold_870: 1782-10518 Eucalyptus grandis
Eucgr.L02402 5.0kb downstream 5.0kb downstream 5000 false scaffold_870: 5519-10518 Eucalyptus grandis
Eucgr.L02402 10.0kb upstream 10.0kb upstream 5518 true scaffold_870: 1-5518 Eucalyptus grandis
Eucgr.L02402 10.0kb upstream 10.0kb upstream 1781 false scaffold_870: 1-1781 Eucalyptus grandis
Eucgr.L02402 10.0kb downstream 10.0kb downstream 13737 true scaffold_870: 1782-15518 Eucalyptus grandis
Eucgr.L02402 10.0kb downstream 10.0kb downstream 10000 false scaffold_870: 5519-15518 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.57808 0.0 6.75932    
cufflinks 1.73649 0.0 4.69659   Low
cufflinks 2.2643 0.0 5.97812    
cufflinks 2.2226 0.0 5.84898    
cufflinks 2.60238 0.0 6.78313    
cufflinks 3.30904 0.0 8.51172   High

0 Strain