Gene : Eucgr.L00887 E. grandis v2.0
Defline:  (1 of 2) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  4
Name:  ? Eucgr.L00887 Secondary Identifier:  ? PAC:32040502
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6829 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L00887 0.5kb upstream 0.5kb upstream 3941 true scaffold_67: 84819-88759 Eucalyptus grandis
Eucgr.L00887 0.5kb upstream 0.5kb upstream 500 false scaffold_67: 88260-88759 Eucalyptus grandis
Eucgr.L00887 0.5kb downstream 0.5kb downstream 3941 true scaffold_67: 84319-88259 Eucalyptus grandis
Eucgr.L00887 0.5kb downstream 0.5kb downstream 500 false scaffold_67: 84319-84818 Eucalyptus grandis
Eucgr.L00887 1.0kb upstream 1.0kb upstream 4441 true scaffold_67: 84819-89259 Eucalyptus grandis
Eucgr.L00887 1.0kb upstream 1.0kb upstream 1000 false scaffold_67: 88260-89259 Eucalyptus grandis
Eucgr.L00887 1.0kb downstream 1.0kb downstream 4441 true scaffold_67: 83819-88259 Eucalyptus grandis
Eucgr.L00887 1.0kb downstream 1.0kb downstream 1000 false scaffold_67: 83819-84818 Eucalyptus grandis
Eucgr.L00887 2.0kb upstream 2.0kb upstream 5441 true scaffold_67: 84819-90259 Eucalyptus grandis
Eucgr.L00887 2.0kb upstream 2.0kb upstream 2000 false scaffold_67: 88260-90259 Eucalyptus grandis
Eucgr.L00887 2.0kb downstream 2.0kb downstream 5441 true scaffold_67: 82819-88259 Eucalyptus grandis
Eucgr.L00887 2.0kb downstream 2.0kb downstream 2000 false scaffold_67: 82819-84818 Eucalyptus grandis
Eucgr.L00887 5.0kb upstream 5.0kb upstream 8441 true scaffold_67: 84819-93259 Eucalyptus grandis
Eucgr.L00887 5.0kb upstream 5.0kb upstream 5000 false scaffold_67: 88260-93259 Eucalyptus grandis
Eucgr.L00887 5.0kb downstream 5.0kb downstream 8441 true scaffold_67: 79819-88259 Eucalyptus grandis
Eucgr.L00887 5.0kb downstream 5.0kb downstream 5000 false scaffold_67: 79819-84818 Eucalyptus grandis
Eucgr.L00887 10.0kb upstream 10.0kb upstream 13441 true scaffold_67: 84819-98259 Eucalyptus grandis
Eucgr.L00887 10.0kb upstream 10.0kb upstream 10000 false scaffold_67: 88260-98259 Eucalyptus grandis
Eucgr.L00887 10.0kb downstream 10.0kb downstream 13441 true scaffold_67: 74819-88259 Eucalyptus grandis
Eucgr.L00887 10.0kb downstream 10.0kb downstream 10000 false scaffold_67: 74819-84818 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.43636 0.0 4.07631    
cufflinks 1.13557 0.0 3.27334    
cufflinks 1.24244 0.0 3.5634    
cufflinks 1.19815 0.0 3.4269    
cufflinks 0.408048 0.0 1.33929 Low Low
cufflinks 0.418504 0.0 1.39069 Low Low

0 Strain