Protein Domain : IPR000684

Type:  Repeat Name:  RNA polymerase II, heptapeptide repeat, eukaryotic
Description:  RNA polymerase II () [, ] is one of the three forms of RNA polymerase that exist in eukaryotic nuclei. The C-terminal region of the largest subunit of this oligomeric enzyme consists of the tandem repeat of a conserved heptapeptide []. The number of repeats varies according to the species (for example there are 17 in Plasmodium, 26 in yeast, 44 in Drosophila, and 52 in mammals). The region containing these repeats is essential for the function of polymerase II. This repeated heptapeptide(called CT7n or CTD) is rich in hydroxyl groups. It probably projects out of the globular catalytic domain and may interact with the acidic activator domains of transcriptional regulatory proteins. It is also known to bind by intercalation to DNA. RNA polymerase II is activated by phosphorylation. The serine and threonine residues in the CT7n repeats are the target of such phosphorylation. Short Name:  RNA_pol_II_repeat_euk

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF05001
PS00115

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR000684
GO:0006366 IPR000684
GO:0005665 IPR000684

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR000684
GO:0006366 IPR000684
GO:0005665 IPR000684

0 Parent Features

561 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
110201 D8S773 PAC:15405805 Selaginella moellendorffii 1764  
evm.model.supercontig_6.315 PAC:16423504 Carica papaya 1348  
29784.m000366 B9SXC0 PAC:16808469 Ricinus communis 1855  
Cucsa.322880.2 PAC:16977844 Cucumis sativus 1853  
Cucsa.322880.3 PAC:16977845 Cucumis sativus 1853  
Cucsa.322880.1 PAC:16977843 Cucumis sativus 1853  
orange1.1g000235m A0A067G7I3 PAC:18098882 Citrus sinensis 1815  
AT4G35800.1 P18616 PAC:19644904 Arabidopsis thaliana 1839  
Thhalv10024193m V4P2F5 PAC:20196117 Eutrema salsugineum 1837  
Ciclev10024686m V4SDF7 PAC:20800767 Citrus clementina 1860  
Lus10041856 PAC:23147000 Linum usitatissimum 1874  
Lus10028403 PAC:23166024 Linum usitatissimum 1341  
Potri.005G107600.1 U5GEY7 PAC:27027561 Populus trichocarpa 1837  
Potri.005G107600.2 PAC:27027562 Populus trichocarpa 1823  
Gorai.003G005700.1 A0A0D2MHK1 PAC:26797221 Gossypium raimondii 1847  
Gorai.003G005700.4 A0A0D2MHK1 PAC:26797222 Gossypium raimondii 1847  
Gorai.003G005700.5 A0A0D2NUG5 PAC:26797223 Gossypium raimondii 1570  
Gorai.003G005700.3 A0A0D2MHK1 PAC:26797219 Gossypium raimondii 1847  
Gorai.003G005700.2 A0A0D2MHK1 PAC:26797220 Gossypium raimondii 1847  
Gorai.007G190500.3 A0A0D2SMR9 PAC:26780240 Gossypium raimondii 1846  
Gorai.007G190500.1 A0A0D2SMR9 PAC:26780239 Gossypium raimondii 1846  
Gorai.007G190500.5 A0A0D2PBT0 PAC:26780242 Gossypium raimondii 1664  
Gorai.007G190500.4 A0A0D2SG78 PAC:26780241 Gossypium raimondii 1809  
Gorai.007G190500.2 A0A0D2SMR9 PAC:26780238 Gossypium raimondii 1846  
26599 I0Z9A9 PAC:27388896 Coccomyxa subellipsoidea C-169 1566  
192426 PAC:27345085 Micromonas pusilla CCMP1545 1710  
94662 C1EA31 PAC:27404184 Micromonas sp RCC299 1720  
26100 A4S3M0 PAC:27416020 Ostreococcus lucimarinus 1646  
Thecc1EG000127t5 A0A061DF84 PAC:27432263 Theobroma cacao 1512  
Thecc1EG000127t3 A0A061DGE8 PAC:27432262 Theobroma cacao 1861  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            1883205
            1700503
            2251729