Protein Domain : IPR002307

Type:  Family Name:  Tyrosine-tRNA ligase
Description:  Tyrosine-tRNA ligases (also known as Tyrosyl-tRNA synthetases) () are widely distributed, being found in archaea, bacteria and eukaryotes. Studies on tyrosine-tRNA ligase have shown that the 'KMSKS' motif plays a role in the initial binding of tRNA(Tyr) to tyrosine-tRNA ligase [].The aminoacyl-tRNA synthetase (also known as aminoacyl-tRNA ligase) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c.The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases[]. Short Name:  Tyr-tRNA-ligase

2 Child Features

DB identifier Type Name
IPR024088 Family Tyrosine-tRNA ligase, bacterial-type
IPR023617 Family Tyrosine-tRNA ligase, archaeal/eukaryotic-type

3 Contains

DB identifier Type Name
IPR014729 Domain Rossmann-like alpha/beta/alpha sandwich fold
IPR002942 Domain RNA-binding S4 domain
IPR001412 Conserved_site Aminoacyl-tRNA synthetase, class I, conserved site

2 Cross Referencess

Identifier
PR01040
TIGR00234

0 Found In

5 GO Annotations

GO Term Gene Name
GO:0000166 IPR002307
GO:0004831 IPR002307
GO:0005524 IPR002307
GO:0006437 IPR002307
GO:0005737 IPR002307

5 Ontology Annotations

GO Term Gene Name
GO:0000166 IPR002307
GO:0004831 IPR002307
GO:0005524 IPR002307
GO:0006437 IPR002307
GO:0005737 IPR002307

1 Parent Features

DB identifier Type Name
IPR002305 Family Aminoacyl-tRNA synthetase, class Ic

423 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
111886 D8S9Y2 PAC:15413613 Selaginella moellendorffii 467  
30131.m006932 B9RGT2 PAC:16818758 Ricinus communis 492  
Cucsa.093940.1 PAC:16957675 Cucumis sativus 475  
orange1.1g037749m A0A067FBD3 PAC:18127482 Citrus sinensis 495  
AT3G02660.1 Q9M876 PAC:19663303 Arabidopsis thaliana 511  
Thhalv10020578m V4M4G5 PAC:20182225 Eutrema salsugineum 499  
Thhalv10020576m V4M4G5 PAC:20182226 Eutrema salsugineum 499  
Ciclev10015023m V4UCV6 PAC:20818792 Citrus clementina 493  
Lus10038795 PAC:23150315 Linum usitatissimum 507  
Lus10039064 PAC:23150318 Linum usitatissimum 507  
Potri.014G140400.1 A0A2K1XVE7 PAC:27035535 Populus trichocarpa 502  
Gorai.002G045400.1 A0A0D2R0M9 PAC:26794780 Gossypium raimondii 491  
12961 I0Z5X5 PAC:27390871 Coccomyxa subellipsoidea C-169 450  
157733 PAC:27340721 Micromonas pusilla CCMP1545 525  
107403 C1EBV6 PAC:27401147 Micromonas sp RCC299 506  
36202 PAC:27414560 Ostreococcus lucimarinus 473  
119608 A4RSR2 PAC:27414590 Ostreococcus lucimarinus 484  
Thecc1EG032159t2 A0A061F864 PAC:27445859 Theobroma cacao 486  
Thecc1EG032159t3 A0A061FA14 PAC:27445857 Theobroma cacao 491  
Thecc1EG032159t1 A0A061FGH1 PAC:27445856 Theobroma cacao 542  
Thecc1EG032159t4 A0A061FA14 PAC:27445858 Theobroma cacao 491  
Migut.N01688.1.p A0A022RQF3 PAC:28925428 Mimulus guttatus 473  
Migut.O00424.1.p A0A022Q736 PAC:28944000 Mimulus guttatus 472  
Araha.4629s0025.1.p PAC:28859955 Arabidopsis halleri 511  
Araha.11756s0342.1.p PAC:28856365 Arabidopsis halleri 422  
Cagra.1194s0036.1.p PAC:28912813 Capsella grandiflora 511  
Glyma.14G202100.1.p K7M864 PAC:30533017 Glycine max 490  
Glyma.02G234500.1.p K7KAB4 PAC:30510890 Glycine max 572  
Brara.A03874.2.p A0A398AUJ5 PAC:30636652 Brassica rapa FPsc 503  
Brara.A03874.1.p A0A398AUJ5 PAC:30636653 Brassica rapa FPsc 503  

8 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8364025
            8274143
            1852601
            2053131
            10673435
            2203971
            11590011
            10630994