Protein Domain : IPR008195

Type:  Family Name:  Ribosomal protein L34Ae
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [],yeast putative ribosomal protein YIL052c and archaebacterial L34e. Short Name:  Ribosomal_L34Ae

0 Child Features

1 Contains

DB identifier Type Name
IPR018065 Conserved_site Ribosomal protein L34e, conserved site

4 Cross Referencess

Identifier
PTHR10759
PF01199
PR01250
MF_00349

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR008195
GO:0006412 IPR008195
GO:0005622 IPR008195
GO:0005840 IPR008195

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR008195
GO:0006412 IPR008195
GO:0005622 IPR008195
GO:0005840 IPR008195

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
113433 D8SC41 PAC:15416253 Selaginella moellendorffii 90  
115983 D8SFT6 PAC:15403609 Selaginella moellendorffii 222  
evm.TU.contig_33094.1 PAC:16430203 Carica papaya 233  
evm.model.supercontig_128.21 PAC:16407444 Carica papaya 119  
evm.model.supercontig_128.22 PAC:16407445 Carica papaya 725  
evm.model.supercontig_14.1 PAC:16408591 Carica papaya 736  
evm.model.supercontig_14.91 PAC:16408843 Carica papaya 538  
evm.model.supercontig_16.32 PAC:16410065 Carica papaya 195  
evm.model.supercontig_17.239 PAC:16410743 Carica papaya 119  
evm.model.supercontig_176.2 PAC:16411080 Carica papaya 492  
evm.model.supercontig_3.510 PAC:16416825 Carica papaya 590  
29726.m003907 B9RSR8 PAC:16806620 Ricinus communis 238  
29813.m001481 B9S8W0 PAC:16809441 Ricinus communis 120  
29813.m001483 B9S8W2 PAC:16809443 Ricinus communis 791  
29974.m000234 B9T1N2 PAC:16814756 Ricinus communis 600  
30169.m006257 B9RHU6 PAC:16821060 Ricinus communis 434  
28838.m000251 B9T0T4 PAC:16801785 Ricinus communis 235  
28838.m000255 B9T0T8 PAC:16801789 Ricinus communis 508  
28129.m000050 B9T740 PAC:16799998 Ricinus communis 764  
28129.m000049 B9T739 PAC:16799997 Ricinus communis 120  
Cucsa.338970.1 PAC:16978817 Cucumis sativus 667  
Cucsa.375250.1 PAC:16981945 Cucumis sativus 104  
Cucsa.117260.1 PAC:16960713 Cucumis sativus 627  
Cucsa.158350.1 PAC:16965110 Cucumis sativus 500  
Cucsa.158240.1 A0A0A0KVL2 PAC:16965096 Cucumis sativus 225  
Cucsa.197660.1 PAC:16968478 Cucumis sativus 188  
Cucsa.197660.2 PAC:16968479 Cucumis sativus 168  
Cucsa.197660.3 PAC:16968480 Cucumis sativus 134  
Cucsa.197820.1 PAC:16968501 Cucumis sativus 120  
Cucsa.199080.1 PAC:16968674 Cucumis sativus 302  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            8049275
            8075394