Protein Domain : IPR009543

Type:  Domain Name:  Vacuolar protein sorting-associated protein 13, SHR-binding domain
Description:  This entry represents a domain, known as SHR-BD, found in vacuolar protein sorting-associated protein 13 (VPS13). In plants, this domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY () [].Proteins containing this domain may play a role in the control of protein cycling through the trans-Golgi network. Vacuolar sorting protein is an ATPase required for endosomal trafficking []. Defects in the human protein VPS13A cause chorea-acanthocytosis, an autosomal recessive neurodegenerative disorder characterised by the gradual onset of hyperkinetic movements and abnormal erythrocyte morphology []. Short Name:  SHR-BD

0 Child Features

0 Contains

1 Cross References

Identifier
PF06650

1 Found In

DB identifier Type Name
IPR017148 Family Vacuolar protein sorting-associated protein 13, fungi

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
439148 D8R2T3 PAC:15421676 Selaginella moellendorffii 3441  
444980 D8SEE5 PAC:15420567 Selaginella moellendorffii 4331  
425516 D8STC7 PAC:15405817 Selaginella moellendorffii 911  
440026 D8R9I5 PAC:15401844 Selaginella moellendorffii 4754  
evm.model.supercontig_119.2 PAC:16406534 Carica papaya 1223  
evm.model.supercontig_146.62 PAC:16409154 Carica papaya 836  
evm.model.supercontig_15.77 PAC:16409436 Carica papaya 393  
evm.model.supercontig_98.44 PAC:16429203 Carica papaya 934  
29822.m003519 B9RUS0 PAC:16809887 Ricinus communis 4226  
29842.m003504 B9RXC4 PAC:16810637 Ricinus communis 3482  
29889.m003361 B9RZX0 PAC:16812307 Ricinus communis 4423  
29676.m001684 B9S8Q6 PAC:16805429 Ricinus communis 1361  
Cucsa.356460.1 PAC:16980306 Cucumis sativus 536  
Cucsa.356480.1 PAC:16980308 Cucumis sativus 1784  
Cucsa.252270.1 PAC:16971923 Cucumis sativus 2205  
Cucsa.313610.1 PAC:16977027 Cucumis sativus 4338  
orange1.1g000010m PAC:18109579 Citrus sinensis 4170  
orange1.1g000009m PAC:18109578 Citrus sinensis 4186  
orange1.1g000011m PAC:18109580 Citrus sinensis 4142  
orange1.1g037902m PAC:18103354 Citrus sinensis 4225  
orange1.1g000031m PAC:18135706 Citrus sinensis 3245  
orange1.1g000033m PAC:18135707 Citrus sinensis 3136  
orange1.1g000035m A0A067EG91 PAC:18135708 Citrus sinensis 2949  
orange1.1g000028m PAC:18135705 Citrus sinensis 3531  
AT4G17140.3 F4JNE2 PAC:19647285 Arabidopsis thaliana 4219  
AT5G24740.1 F4KIH9 PAC:19669096 Arabidopsis thaliana 3464  
AT3G50380.1 F4J0L9 PAC:19664928 Arabidopsis thaliana 3072  
AT1G48090.1 F4HWS2 PAC:19653421 Arabidopsis thaliana 4146  
Thhalv10024178m V4P7Z1 PAC:20194901 Eutrema salsugineum 3233  
Thhalv10024176m V4LYH2 PAC:20194900 Eutrema salsugineum 4170  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10637304
            11381253
            2344435