Protein Domain : IPR022312

Type:  Family Name:  DNA polymerase family X
Description:  DNA carries the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the mostimportant events in the cell life cycle. This function is mediated by DNA-directed DNA-polymerases, which add nucleotide triphosphate (dNTP)residues to the 5'-end of the growing DNA chain, using a complementary DNA as template. Small RNA molecules are generally used as primers forchain elongation, although terminal proteins may also be used. Three motifs, A, B and C [], are seen to be conserved across all DNA-polymerases, with motifs A and C also seen in RNA- polymerases. They are centred on invariant residues, and their structural significance was implied from the Klenow (Escherichia coli) structure: motif A contains a strictly-conserved aspartate at the junction of a beta-strand and an alpha-helix; motif B contains an alpha-helix with positive charges; and motif C has a doublet of negative charges, located in a beta-turn-beta secondary structure [].DNA polymerases () can be classified, on the basis of sequence similarity [, ], into at least four different groups: A, B, C and X. Members of family X are small (about 40 kDa) compared with other polymerases and encompass two distinct polymerase enzymes that have similar functionality: vertebrate polymerase beta (same as yeast pol 4), and terminal deoxynucleotidyl-transferase (TdT) (). The former functions in DNA repair, while the latter terminally adds single nucleotides to polydeoxynucleotide chains.Both enzymes catalyse addition of nucleotides in a distributive manner, i.e. they dissociate from the template-primer after addition of each nucleotide.DNA-polymerases show a degree of structural similarity with RNA-polymerases. Short Name:  DNA_pol_X

2 Child Features

DB identifier Type Name
IPR002008 Family DNA polymerase family X, beta-like
IPR001726 Family DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu

5 Contains

DB identifier Type Name
IPR002054 Domain DNA-directed DNA polymerase X
IPR010996 Domain DNA polymerase beta-like, N-terminal domain
IPR018944 Domain DNA polymerase lambda, fingers domain
IPR001357 Domain BRCT domain
IPR019843 Binding_site DNA polymerase family X, binding site

1 Cross References

Identifier
PR00869

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0003677 IPR022312
GO:0034061 IPR022312

2 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR022312
GO:0034061 IPR022312

0 Parent Features

340 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
83116 D8R0V4 PAC:15411819 Selaginella moellendorffii 340  
155063 D8SG82 PAC:15403133 Selaginella moellendorffii 315  
86291 D8R616 PAC:15421369 Selaginella moellendorffii 310  
evm.model.supercontig_5.348 PAC:16421471 Carica papaya 155  
evm.model.supercontig_5.345 PAC:16421468 Carica papaya 151  
59505.m000056 B9T8F9 PAC:16829265 Ricinus communis 126  
Cucsa.285760.1 PAC:16974899 Cucumis sativus 515  
orange1.1g015933m A0A067GSA1 PAC:18102054 Citrus sinensis 398  
orange1.1g012862m A0A067H4G8 PAC:18102053 Citrus sinensis 455  
orange1.1g009281m A0A067H4W7 PAC:18102048 Citrus sinensis 538  
orange1.1g009303m PAC:18102047 Citrus sinensis 538  
orange1.1g010406m PAC:18102050 Citrus sinensis 511  
orange1.1g009742m PAC:18102049 Citrus sinensis 527  
orange1.1g012847m A0A067H4G8 PAC:18102052 Citrus sinensis 455  
orange1.1g012388m A0A067GV70 PAC:18102051 Citrus sinensis 464  
AT1G10520.1 Q9FNY4 PAC:19652115 Arabidopsis thaliana 529  
Thhalv10009477m V4KDK3 PAC:20185430 Eutrema salsugineum 529  
Ciclev10031184m V4VGR5 PAC:20804253 Citrus clementina 538  
Ciclev10031277m V4SV18 PAC:20804254 Citrus clementina 511  
Ciclev10031736m V4TJF2 PAC:20804256 Citrus clementina 398  
Ciclev10031502m V4TPG7 PAC:20804255 Citrus clementina 455  
Lus10007325 PAC:23166246 Linum usitatissimum 153  
Lus10030831 PAC:23155315 Linum usitatissimum 498  
Lus10030656 PAC:23140674 Linum usitatissimum 513  
Potri.010G094800.5 PAC:26979814 Populus trichocarpa 434  
Potri.010G094800.1 A0A2K1YRG1 PAC:26979810 Populus trichocarpa 528  
Potri.010G094800.3 PAC:26979811 Populus trichocarpa 508  
Potri.010G094800.2 A0A2K1YRF8 PAC:26979812 Populus trichocarpa 457  
Potri.010G094800.4 PAC:26979813 Populus trichocarpa 448  
Gorai.002G164200.3 A0A0D2R796 PAC:26793330 Gossypium raimondii 527  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            2196557
            3479792