Protein Domain : IPR005085

Type:  Domain Name:  Carbohydrate binding module family 25
Description:  A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins.CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology.Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see [].This entry represents , which has been shown to bind starch []. Short Name:  CBM_fam25

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF03423
SM01066

0 Found In

1 GO Annotation

GO Term Gene Name
GO:2001070 IPR005085

1 Ontology Annotations

GO Term Gene Name
GO:2001070 IPR005085

0 Parent Features

837 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
154776 D8SEU0 PAC:15405633 Selaginella moellendorffii 899  
evm.model.supercontig_152.17 PAC:16409599 Carica papaya 1195  
29842.m003588 PAC:16810720 Ricinus communis 1095  
Cucsa.085800.1 PAC:16956700 Cucumis sativus 1152  
Cucsa.085800.2 PAC:16956701 Cucumis sativus 1152  
AT1G11720.1 F4IAG2 PAC:19655579 Arabidopsis thaliana 1042  
AT1G11720.2 F4IAG1 PAC:19655578 Arabidopsis thaliana 1094  
Thhalv10006781m V4MUK5 PAC:20188386 Eutrema salsugineum 851  
Thhalv10006631m V4KD78 PAC:20188385 Eutrema salsugineum 1096  
Ciclev10014319m PAC:20815361 Citrus clementina 798  
Lus10006780 PAC:23163573 Linum usitatissimum 1111  
Lus10020044 PAC:23156236 Linum usitatissimum 1098  
Potri.004G014100.2 PAC:26989421 Populus trichocarpa 1044  
Potri.004G014100.1 A0A2K2ANF6 PAC:26989420 Populus trichocarpa 1163  
Gorai.009G178700.4 A0A0D2TRR6 PAC:26765917 Gossypium raimondii 1040  
Gorai.009G178700.6 A0A0D2TRQ6 PAC:26765919 Gossypium raimondii 732  
Gorai.009G178700.5 A0A0D2QI67 PAC:26765918 Gossypium raimondii 784  
Gorai.009G178700.3 A0A0D2S385 PAC:26765916 Gossypium raimondii 1119  
Gorai.009G178700.2 A0A0D2TLN9 PAC:26765915 Gossypium raimondii 1138  
Gorai.009G178700.1 A0A0D2UP73 PAC:26765914 Gossypium raimondii 1162  
Gorai.011G013800.6 A0A0D2UKN2 PAC:26811708 Gossypium raimondii 1086  
Gorai.011G013800.2 A0A0D2UKN2 PAC:26811707 Gossypium raimondii 1086  
Gorai.011G013800.1 A0A0D2UKM8 PAC:26811706 Gossypium raimondii 1153  
Gorai.011G013800.4 A0A0D2T0M9 PAC:26811710 Gossypium raimondii 1075  
Gorai.011G013800.3 A0A0D2T0M9 PAC:26811709 Gossypium raimondii 1075  
Gorai.011G013800.5 A0A0D2T0M9 PAC:26811711 Gossypium raimondii 1075  
65989 I0YYV3 PAC:27386689 Coccomyxa subellipsoidea C-169 163  
66167 I0YXJ0 PAC:27392602 Coccomyxa subellipsoidea C-169 1296  
51899 C1N295 PAC:27339309 Micromonas pusilla CCMP1545 1934  
36395 C1N659 PAC:27342253 Micromonas pusilla CCMP1545 1473  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            3338453
            3134347
            15214846
            16230347