Protein Domain : IPR005146

Type:  Domain Name:  B3/B4 tRNA-binding domain
Description:  This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code. Short Name:  B3/B4_tRNA-bd

1 Child Features

DB identifier Type Name
IPR020825 Domain Phenylalanyl-tRNA synthetase, B3/B4

0 Contains

2 Cross Referencess

Identifier
PF03483
SM00873

2 Found Ins

DB identifier Type Name
IPR004531 Family Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic
IPR004532 Family Phenylalanine-tRNA ligase, class IIc, beta subunit

2 GO Annotations

GO Term Gene Name
GO:0003723 IPR005146
GO:0004826 IPR005146

2 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR005146
GO:0004826 IPR005146

0 Parent Features

541 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
143204 D8R2W3 PAC:15414016 Selaginella moellendorffii 586  
evm.model.supercontig_271.5 PAC:16415743 Carica papaya 578  
30075.m001188 B9SAX6 PAC:16817041 Ricinus communis 593  
35700.m000026 B9TFK1 PAC:16826705 Ricinus communis 381  
28809.m000038 B9T9G4 PAC:16801719 Ricinus communis 421  
Cucsa.198410.3 PAC:16968591 Cucumis sativus 525  
Cucsa.198410.4 PAC:16968592 Cucumis sativus 486  
Cucsa.198410.2 A0A0A0LPD2 PAC:16968590 Cucumis sativus 591  
Cucsa.198410.1 A0A0A0LPD2 PAC:16968589 Cucumis sativus 591  
orange1.1g009703m A0A067GIP5 PAC:18114481 Citrus sinensis 528  
orange1.1g007872m A0A067GIY6 PAC:18114480 Citrus sinensis 586  
orange1.1g007706m A0A067G9J2 PAC:18114477 Citrus sinensis 592  
orange1.1g007714m A0A067G9J2 PAC:18114478 Citrus sinensis 592  
orange1.1g007710m A0A067G9J2 PAC:18114479 Citrus sinensis 592  
AT1G72550.2 F4IDD6 PAC:19649852 Arabidopsis thaliana 584  
AT1G72550.1 Q9SGE9 PAC:19649851 Arabidopsis thaliana 598  
Thhalv10007156m V4L205 PAC:20187895 Eutrema salsugineum 591  
Thhalv10007155m V4L205 PAC:20187896 Eutrema salsugineum 591  
Ciclev10014690m V4W7L5 PAC:20817420 Citrus clementina 592  
Lus10009382 PAC:23142622 Linum usitatissimum 608  
Lus10020531 PAC:23172340 Linum usitatissimum 596  
Potri.018G070200.1 B9N5I6 PAC:27008900 Populus trichocarpa 595  
Potri.018G070200.2 B9N5I6 PAC:27008901 Populus trichocarpa 595  
Potri.013G068100.1 PAC:26994101 Populus trichocarpa 562  
Gorai.008G291100.1 A0A0D2UBS8 PAC:26813772 Gossypium raimondii 591  
Gorai.008G291100.2 A0A0D2T912 PAC:26813773 Gossypium raimondii 485  
Gorai.008G291100.3 A0A0D2UBS8 PAC:26813771 Gossypium raimondii 591  
27619 I0Z604 PAC:27390356 Coccomyxa subellipsoidea C-169 626  
45062 C1N902 PAC:27344626 Micromonas pusilla CCMP1545 595  
57307 C1E2N4 PAC:27398635 Micromonas sp RCC299 665  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7664121
            15526031