Protein Domain : IPR000662

Type:  Family Name:  Capsid protein VP1,Polyomavirus
Description:  This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus(strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly []. Short Name:  Capsid_VP1_Polyomavir

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PF00718
PIRSF003376
G3DSA:2.60.175.10

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0005198 IPR000662
GO:0019028 IPR000662

2 Ontology Annotations

GO Term Gene Name
GO:0005198 IPR000662
GO:0019028 IPR000662

0 Parent Features

130 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
orange1.1g037849m A0A067H362 PAC:18136140 Citrus sinensis 92  
AT5G45850.1 F4KEN8 PAC:19665798 Arabidopsis thaliana 445  
Ciclev10023977m V4U983 PAC:20809866 Citrus clementina 92  
Bradi4g03046.1.p PAC:31141785 Brachypodium distachyon 195  
Medtr1g024910.1 G7I754 PAC:31100012 Medicago truncatula 205  
Traes_3AL_73ED96117.1 PAC:31952910 Triticum aestivum 76  
Traes_6BS_179B5B6E1.1 PAC:31932078 Triticum aestivum 215  
GSMUA_Achr8P25770_001 PAC:32309568 Musa acuminata 155  
Manes.02G093300.1.p A0A2C9WCA8 PAC:32334043 Manihot esculenta 605  
Bradi3g37825.1.p A0A2K2D1U5 PAC:32812310 Brachypodium distachyon 137  
Dusal.0119s00027.1.p PAC:33195188 Dunaliella salina 85  
Brdisv1Per11033929m.p PAC:33238863 Brachypodium distachyon Per1 195  
Brdisv1Per11045592m.p PAC:33250175 Brachypodium distachyon Per1 144  
Brdisv1Uni21017629m.p PAC:33280833 Brachypodium distachyon Uni2 144  
Brdisv1Bd3-1_r1014349m.p PAC:33319260 Brachypodium distachyon Bd3-1 144  
Brdisv1Koz-11018757m.p PAC:33409260 Brachypodium distachyon Koz-1 144  
Brdisv20Bd21Ref1020011m.p PAC:33435325 Brachypodium distachyon Bd21 AnntCtrl 144  
Brdisv20Bd21Ref1036128m.p PAC:33454188 Brachypodium distachyon Bd21 AnntCtrl 195  
Brdisv1pangenome1033270m.p PAC:33610544 Brachypodium distachyon Pangenome 144  
Brdisv1pangenome1049349m.p PAC:33603163 Brachypodium distachyon Pangenome 195  
Brdisv1ABR6_r1018803m.p PAC:33687270 Brachypodium distachyon ABR6 144  
Brdisv1ABR6_r1024152m.p PAC:33659740 Brachypodium distachyon ABR6 195  
Brdisv1ABR21018520m.p PAC:33718875 Brachypodium distachyon ABR2 144  
Brdisv1ABR21023900m.p PAC:33710881 Brachypodium distachyon ABR2 287  
Brdisv1Bis-11017587m.p PAC:33765568 Brachypodium distachyon Bis-1 144  
Brdisv1S8iiC1033169m.p PAC:33873559 Brachypodium distachyon S8iic 248  
Brdisv1S8iiC1044719m.p PAC:33880456 Brachypodium distachyon S8iic 144  
Brdisv1Tek-21017140m.p PAC:33892248 Brachypodium distachyon Tek-2 144  
Brdisv1Kah-51018624m.p PAC:33933815 Brachypodium distachyon Kah-5 144  
Brdisv1ABR31033471m.p PAC:34012277 Brachypodium distachyon ABR3 195  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9628860
            12928495