Protein Domain : IPR012270

Type:  Family Name:  CCR4-NOT complex, subunit 3/ 5
Description:  The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase [].This group represents a CCR4-NOT complex, subunits 3 and 5. Short Name:  CCR4-NOT_su3/5

0 Child Features

2 Contains

DB identifier Type Name
IPR007282 Domain NOT2/NOT3/NOT5
IPR007207 Domain CCR4-Not complex component, Not N-terminal domain

1 Cross References

Identifier
PIRSF005290

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0006355 IPR012270
GO:0005634 IPR012270

2 Ontology Annotations

GO Term Gene Name
GO:0006355 IPR012270
GO:0005634 IPR012270

0 Parent Features

735 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
orange1.1g004110m PAC:18116219 Citrus sinensis 773  
orange1.1g007007m PAC:18116221 Citrus sinensis 621  
orange1.1g005538m PAC:18116220 Citrus sinensis 691  
orange1.1g011072m PAC:18116223 Citrus sinensis 494  
SapurV1A.1928s0010.4.p PAC:31454882 Salix purpurea 652  
SapurV1A.1928s0010.5.p PAC:31454883 Salix purpurea 652  
Traes_4AL_DF50540B4.6 PAC:31785447 Triticum aestivum 630  
Traes_4AL_DF50540B4.5 PAC:31785448 Triticum aestivum 630  
Traes_4BS_6943FED4B.5 PAC:31944010 Triticum aestivum 747  
Traes_4DS_7B2AFD0EC.6 PAC:31885814 Triticum aestivum 748  
Traes_4DS_7B2AFD0EC.5 PAC:31885813 Triticum aestivum 768  
Traes_4DS_7B2AFD0EC.8 PAC:31885816 Triticum aestivum 629  
Traes_4DS_7B2AFD0EC.7 PAC:31885815 Triticum aestivum 645  
Pahal.I02377.4 PAC:32510289 Panicum hallii 630  
Sphfalx0145s0039.8.p PAC:32627955 Sphagnum fallax 903  
Sphfalx0145s0039.6.p PAC:32627953 Sphagnum fallax 933  
LOC_Os03g44900.2 PAC:33131471 Oryza sativa 817  
LOC_Os03g44900.3 PAC:33131472 Oryza sativa 757  
AUR62032669-RA PAC:36307424 Chenopodium quinoa 917  
AUR62035298-RA PAC:36295172 Chenopodium quinoa 884  
Phvul.001G109300.2.p PAC:37170938 Phaseolus vulgaris 889  
Phvul.001G109300.1.p V7CUV9 PAC:37170937 Phaseolus vulgaris 902  
Phvul.004G079000.1.p PAC:37163135 Phaseolus vulgaris 879  
Zm00008a004800_P01 PAC:37202634 Zea mays PH207 848  
Zm00008a019724_P01 PAC:37211688 Zea mays PH207 778  
Potri.013G059800.3.p A0A2K1Y1N3 PAC:37234661 Populus trichocarpa 830  
Potri.013G059800.4.p A0A2K1Y1N5 PAC:37234660 Populus trichocarpa 874  
Potri.013G059800.2.p A0A2K1Y1P8 PAC:37234659 Populus trichocarpa 892  
Potri.019G032800.4.p A0A2K1WNS9 PAC:37260819 Populus trichocarpa 902  
Podel.13G063500.2.p PAC:37335396 Populus deltoides WV94 873  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11696541
            10637334
            12957374
            18430587