Gene : Sevir.6G042500 S. viridis v1.1
Defline:  (1 of 1) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  425
Name:  ? Sevir.6G042500 Secondary Identifier:  ? PAC:32643002
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.6G042500 0.5kb upstream 0.5kb upstream 4653 true Chr_06: 3493506-3498158 Setaria viridis
Sevir.6G042500 0.5kb upstream 0.5kb upstream 500 false Chr_06: 3493506-3494005 Setaria viridis
Sevir.6G042500 0.5kb downstream 0.5kb downstream 4653 true Chr_06: 3494006-3498658 Setaria viridis
Sevir.6G042500 0.5kb downstream 0.5kb downstream 500 false Chr_06: 3498159-3498658 Setaria viridis
Sevir.6G042500 1.0kb upstream 1.0kb upstream 5153 true Chr_06: 3493006-3498158 Setaria viridis
Sevir.6G042500 1.0kb upstream 1.0kb upstream 1000 false Chr_06: 3493006-3494005 Setaria viridis
Sevir.6G042500 1.0kb downstream 1.0kb downstream 5153 true Chr_06: 3494006-3499158 Setaria viridis
Sevir.6G042500 1.0kb downstream 1.0kb downstream 1000 false Chr_06: 3498159-3499158 Setaria viridis
Sevir.6G042500 2.0kb upstream 2.0kb upstream 6153 true Chr_06: 3492006-3498158 Setaria viridis
Sevir.6G042500 2.0kb upstream 2.0kb upstream 2000 false Chr_06: 3492006-3494005 Setaria viridis
Sevir.6G042500 2.0kb downstream 2.0kb downstream 6153 true Chr_06: 3494006-3500158 Setaria viridis
Sevir.6G042500 2.0kb downstream 2.0kb downstream 2000 false Chr_06: 3498159-3500158 Setaria viridis
Sevir.6G042500 5.0kb upstream 5.0kb upstream 9153 true Chr_06: 3489006-3498158 Setaria viridis
Sevir.6G042500 5.0kb upstream 5.0kb upstream 5000 false Chr_06: 3489006-3494005 Setaria viridis
Sevir.6G042500 5.0kb downstream 5.0kb downstream 9153 true Chr_06: 3494006-3503158 Setaria viridis
Sevir.6G042500 5.0kb downstream 5.0kb downstream 5000 false Chr_06: 3498159-3503158 Setaria viridis
Sevir.6G042500 10.0kb upstream 10.0kb upstream 14153 true Chr_06: 3484006-3498158 Setaria viridis
Sevir.6G042500 10.0kb upstream 10.0kb upstream 10000 false Chr_06: 3484006-3494005 Setaria viridis
Sevir.6G042500 10.0kb downstream 10.0kb downstream 14153 true Chr_06: 3494006-3508158 Setaria viridis
Sevir.6G042500 10.0kb downstream 10.0kb downstream 10000 false Chr_06: 3498159-3508158 Setaria viridis

0 Protein Family

19 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.422     High  
cufflinks 14.28     High  
cufflinks 13.502     High Low
cufflinks 21.846     High  
cufflinks 24.213     High  
cufflinks 12.98     High Low
cufflinks 16.738     High  
cufflinks 19.26     High  
cufflinks 24.415     High  
cufflinks 19.542     High  
cufflinks 40.948     High High
cufflinks 20.048     High  
cufflinks 13.615     High Low
cufflinks 18.815     High  
cufflinks 30.738     High High
cufflinks 16.377     High  
cufflinks 28.138     High High
cufflinks 14.876     High  
cufflinks 12.426     High Low

0 Strain