Gene : Seita.1G001700 S. italica v2.2
Defline:  (1 of 29) PF01190 - Pollen proteins Ole e I like (Pollen_Ole_e_I) Genomic Order:  17
Name:  ? Seita.1G001700 Secondary Identifier:  ? PAC:32694516
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G001700 0.5kb upstream 0.5kb upstream 1990 true scaffold_1: 144647-146636 Setaria italica
Seita.1G001700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 144647-145146 Setaria italica
Seita.1G001700 0.5kb downstream 0.5kb downstream 1990 true scaffold_1: 145147-147136 Setaria italica
Seita.1G001700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 146637-147136 Setaria italica
Seita.1G001700 1.0kb upstream 1.0kb upstream 2490 true scaffold_1: 144147-146636 Setaria italica
Seita.1G001700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 144147-145146 Setaria italica
Seita.1G001700 1.0kb downstream 1.0kb downstream 2490 true scaffold_1: 145147-147636 Setaria italica
Seita.1G001700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 146637-147636 Setaria italica
Seita.1G001700 2.0kb upstream 2.0kb upstream 3490 true scaffold_1: 143147-146636 Setaria italica
Seita.1G001700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 143147-145146 Setaria italica
Seita.1G001700 2.0kb downstream 2.0kb downstream 3490 true scaffold_1: 145147-148636 Setaria italica
Seita.1G001700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 146637-148636 Setaria italica
Seita.1G001700 5.0kb upstream 5.0kb upstream 6490 true scaffold_1: 140147-146636 Setaria italica
Seita.1G001700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 140147-145146 Setaria italica
Seita.1G001700 5.0kb downstream 5.0kb downstream 6490 true scaffold_1: 145147-151636 Setaria italica
Seita.1G001700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 146637-151636 Setaria italica
Seita.1G001700 10.0kb upstream 10.0kb upstream 11490 true scaffold_1: 135147-146636 Setaria italica
Seita.1G001700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 135147-145146 Setaria italica
Seita.1G001700 10.0kb downstream 10.0kb downstream 11490 true scaffold_1: 145147-156636 Setaria italica
Seita.1G001700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 146637-156636 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181063 5267 Panicoideae View MSA
124578664 5269 Grass View MSA
122042133 5273 Angiosperm View MSA
121349082 5274 Embryophyte View MSA
123381156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low  
cufflinks 7.102       High
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.501        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.014     Low  
cufflinks 0.073     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain