Gene : Seita.1G043600 S. italica v2.2
Defline:  (1 of 1) PTHR19851:SF7 - PROTEIN K06A9.2 Genomic Order:  436
Name:  ? Seita.1G043600 Secondary Identifier:  ? PAC:32695330
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G043600 0.5kb upstream 0.5kb upstream 4921 true scaffold_1: 4303014-4307934 Setaria italica
Seita.1G043600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4303014-4303513 Setaria italica
Seita.1G043600 0.5kb downstream 0.5kb downstream 4921 true scaffold_1: 4303514-4308434 Setaria italica
Seita.1G043600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4307935-4308434 Setaria italica
Seita.1G043600 1.0kb upstream 1.0kb upstream 5421 true scaffold_1: 4302514-4307934 Setaria italica
Seita.1G043600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4302514-4303513 Setaria italica
Seita.1G043600 1.0kb downstream 1.0kb downstream 5421 true scaffold_1: 4303514-4308934 Setaria italica
Seita.1G043600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4307935-4308934 Setaria italica
Seita.1G043600 2.0kb upstream 2.0kb upstream 6421 true scaffold_1: 4301514-4307934 Setaria italica
Seita.1G043600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4301514-4303513 Setaria italica
Seita.1G043600 2.0kb downstream 2.0kb downstream 6421 true scaffold_1: 4303514-4309934 Setaria italica
Seita.1G043600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4307935-4309934 Setaria italica
Seita.1G043600 5.0kb upstream 5.0kb upstream 9421 true scaffold_1: 4298514-4307934 Setaria italica
Seita.1G043600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4298514-4303513 Setaria italica
Seita.1G043600 5.0kb downstream 5.0kb downstream 9421 true scaffold_1: 4303514-4312934 Setaria italica
Seita.1G043600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4307935-4312934 Setaria italica
Seita.1G043600 10.0kb upstream 10.0kb upstream 14421 true scaffold_1: 4293514-4307934 Setaria italica
Seita.1G043600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4293514-4303513 Setaria italica
Seita.1G043600 10.0kb downstream 10.0kb downstream 14421 true scaffold_1: 4303514-4317934 Setaria italica
Seita.1G043600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4307935-4317934 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178493 5267 Panicoideae View MSA
124572713 5269 Grass View MSA
122049058 5273 Angiosperm View MSA
121311228 5274 Embryophyte View MSA
123348552 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.038        
cufflinks 10.432        
cufflinks 18.145     High  
cufflinks 14.642     High  
cufflinks 17.461     High  
cufflinks 11.689        
cufflinks 18.61     High High
cufflinks 10.039       Low
cufflinks 9.626       Low
cufflinks 7.338       Low
cufflinks 11.028        
cufflinks 13.572        
cufflinks 14.581     High  
cufflinks 26.109     High High
cufflinks 18.53     High High
cufflinks 9.965       Low
cufflinks 13.018        
cufflinks 15.979     High  
cufflinks 16.76     High  
cufflinks 15.623     High  

0 Strain