Gene : Seita.1G044800 S. italica v2.2
Defline:  (1 of 1) PF00153//PF13499//PF13833 - Mitochondrial carrier protein (Mito_carr) // EF-hand domain pair (EF-hand_7) // EF-hand domain pair (EF-hand_8) Genomic Order:  448
Name:  ? Seita.1G044800 Secondary Identifier:  ? PAC:32694199
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G044800 0.5kb upstream 0.5kb upstream 6209 true scaffold_1: 4416432-4422640 Setaria italica
Seita.1G044800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4416432-4416931 Setaria italica
Seita.1G044800 0.5kb downstream 0.5kb downstream 6209 true scaffold_1: 4416932-4423140 Setaria italica
Seita.1G044800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4422641-4423140 Setaria italica
Seita.1G044800 1.0kb upstream 1.0kb upstream 6709 true scaffold_1: 4415932-4422640 Setaria italica
Seita.1G044800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4415932-4416931 Setaria italica
Seita.1G044800 1.0kb downstream 1.0kb downstream 6709 true scaffold_1: 4416932-4423640 Setaria italica
Seita.1G044800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4422641-4423640 Setaria italica
Seita.1G044800 2.0kb upstream 2.0kb upstream 7709 true scaffold_1: 4414932-4422640 Setaria italica
Seita.1G044800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4414932-4416931 Setaria italica
Seita.1G044800 2.0kb downstream 2.0kb downstream 7709 true scaffold_1: 4416932-4424640 Setaria italica
Seita.1G044800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4422641-4424640 Setaria italica
Seita.1G044800 5.0kb upstream 5.0kb upstream 10709 true scaffold_1: 4411932-4422640 Setaria italica
Seita.1G044800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4411932-4416931 Setaria italica
Seita.1G044800 5.0kb downstream 5.0kb downstream 10709 true scaffold_1: 4416932-4427640 Setaria italica
Seita.1G044800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4422641-4427640 Setaria italica
Seita.1G044800 10.0kb upstream 10.0kb upstream 15709 true scaffold_1: 4406932-4422640 Setaria italica
Seita.1G044800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4406932-4416931 Setaria italica
Seita.1G044800 10.0kb downstream 10.0kb downstream 15709 true scaffold_1: 4416932-4432640 Setaria italica
Seita.1G044800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4422641-4432640 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178100 5267 Panicoideae View MSA
124588022 5269 Grass View MSA
122042034 5273 Angiosperm View MSA
123429077 5275 Viridiplantae View MSA
121349229 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.853        
cufflinks 2.879        
cufflinks 0.102       Low
cufflinks 0.086     Low Low
cufflinks 0.151       Low
cufflinks 2.773        
cufflinks 1.048        
cufflinks 1.488        
cufflinks 1.193        
cufflinks 1.605        
cufflinks 1.866        
cufflinks 2.047        
cufflinks 2.869        
cufflinks 0.109     Low Low
cufflinks 2.492        
cufflinks 0.5        
cufflinks 1.933        
cufflinks 0.65        
cufflinks 0.13       Low
cufflinks 3.352       High

0 Strain