Gene : Seita.1G043200 S. italica v2.2
Defline:  (1 of 3) 4.1.99.13 - (6-4)DNA photolyase / DNA photolyase Genomic Order:  432
Name:  ? Seita.1G043200 Secondary Identifier:  ? PAC:32697034
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G043200 0.5kb upstream 0.5kb upstream 4148 true scaffold_1: 4267871-4272018 Setaria italica
Seita.1G043200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4271519-4272018 Setaria italica
Seita.1G043200 0.5kb downstream 0.5kb downstream 4148 true scaffold_1: 4267371-4271518 Setaria italica
Seita.1G043200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4267371-4267870 Setaria italica
Seita.1G043200 1.0kb upstream 1.0kb upstream 4648 true scaffold_1: 4267871-4272518 Setaria italica
Seita.1G043200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4271519-4272518 Setaria italica
Seita.1G043200 1.0kb downstream 1.0kb downstream 4648 true scaffold_1: 4266871-4271518 Setaria italica
Seita.1G043200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4266871-4267870 Setaria italica
Seita.1G043200 2.0kb upstream 2.0kb upstream 5648 true scaffold_1: 4267871-4273518 Setaria italica
Seita.1G043200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4271519-4273518 Setaria italica
Seita.1G043200 2.0kb downstream 2.0kb downstream 5648 true scaffold_1: 4265871-4271518 Setaria italica
Seita.1G043200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4265871-4267870 Setaria italica
Seita.1G043200 5.0kb upstream 5.0kb upstream 8648 true scaffold_1: 4267871-4276518 Setaria italica
Seita.1G043200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4271519-4276518 Setaria italica
Seita.1G043200 5.0kb downstream 5.0kb downstream 8648 true scaffold_1: 4262871-4271518 Setaria italica
Seita.1G043200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4262871-4267870 Setaria italica
Seita.1G043200 10.0kb upstream 10.0kb upstream 13648 true scaffold_1: 4267871-4281518 Setaria italica
Seita.1G043200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4271519-4281518 Setaria italica
Seita.1G043200 10.0kb downstream 10.0kb downstream 13648 true scaffold_1: 4257871-4271518 Setaria italica
Seita.1G043200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4257871-4267870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197332 5267 Panicoideae View MSA
124575728 5269 Grass View MSA
122046460 5273 Angiosperm View MSA
121346822 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.749        
cufflinks 2.323        
cufflinks 0.911        
cufflinks 0.921        
cufflinks 1.32        
cufflinks 1.76        
cufflinks 2.813       High
cufflinks 2.347        
cufflinks 1.924        
cufflinks 0.376       Low
cufflinks 0.595        
cufflinks 0.898        
cufflinks 0.566        
cufflinks 1.127        
cufflinks 0.275       Low
cufflinks 7.62       High
cufflinks 1.031        
cufflinks 0.342       Low
cufflinks 1.21        
cufflinks 1.075        

0 Strain