Gene : Seita.1G046900 S. italica v2.2
Defline:  (1 of 1) PTHR12917:SF1 - AT13091P Genomic Order:  469
Name:  ? Seita.1G046900 Secondary Identifier:  ? PAC:32696644
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G046900 0.5kb upstream 0.5kb upstream 5619 true scaffold_1: 4592040-4597658 Setaria italica
Seita.1G046900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4597159-4597658 Setaria italica
Seita.1G046900 0.5kb downstream 0.5kb downstream 5619 true scaffold_1: 4591540-4597158 Setaria italica
Seita.1G046900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4591540-4592039 Setaria italica
Seita.1G046900 1.0kb upstream 1.0kb upstream 6119 true scaffold_1: 4592040-4598158 Setaria italica
Seita.1G046900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4597159-4598158 Setaria italica
Seita.1G046900 1.0kb downstream 1.0kb downstream 6119 true scaffold_1: 4591040-4597158 Setaria italica
Seita.1G046900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4591040-4592039 Setaria italica
Seita.1G046900 2.0kb upstream 2.0kb upstream 7119 true scaffold_1: 4592040-4599158 Setaria italica
Seita.1G046900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4597159-4599158 Setaria italica
Seita.1G046900 2.0kb downstream 2.0kb downstream 7119 true scaffold_1: 4590040-4597158 Setaria italica
Seita.1G046900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4590040-4592039 Setaria italica
Seita.1G046900 5.0kb upstream 5.0kb upstream 10119 true scaffold_1: 4592040-4602158 Setaria italica
Seita.1G046900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4597159-4602158 Setaria italica
Seita.1G046900 5.0kb downstream 5.0kb downstream 10119 true scaffold_1: 4587040-4597158 Setaria italica
Seita.1G046900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4587040-4592039 Setaria italica
Seita.1G046900 10.0kb upstream 10.0kb upstream 15119 true scaffold_1: 4592040-4607158 Setaria italica
Seita.1G046900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4597159-4607158 Setaria italica
Seita.1G046900 10.0kb downstream 10.0kb downstream 15119 true scaffold_1: 4582040-4597158 Setaria italica
Seita.1G046900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4582040-4592039 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185673 5267 Panicoideae View MSA
124575071 5269 Grass View MSA
122047571 5273 Angiosperm View MSA
121343926 5274 Embryophyte View MSA
123424063 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.387     High  
cufflinks 15.296     High  
cufflinks 8.628        
cufflinks 7.223       Low
cufflinks 6.398       Low
cufflinks 15.707     High  
cufflinks 10.226        
cufflinks 13.022        
cufflinks 10.142        
cufflinks 19.098     High  
cufflinks 19.008     High  
cufflinks 18.333     High  
cufflinks 26.567     High High
cufflinks 12.02        
cufflinks 21.81     High High
cufflinks 6.016       Low
cufflinks 19.612     High  
cufflinks 10.976        
cufflinks 8.209       Low
cufflinks 20.916     High High

0 Strain