Gene : Seita.1G049000 S. italica v2.2
Defline:  (1 of 1) 3.7.1.2 - Fumarylacetoacetase / Fumarylacetoacetate hydrolase Genomic Order:  490
Name:  ? Seita.1G049000 Secondary Identifier:  ? PAC:32695836
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G049000 0.5kb upstream 0.5kb upstream 4028 true scaffold_1: 4762157-4766184 Setaria italica
Seita.1G049000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4762157-4762656 Setaria italica
Seita.1G049000 0.5kb downstream 0.5kb downstream 4028 true scaffold_1: 4762657-4766684 Setaria italica
Seita.1G049000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4766185-4766684 Setaria italica
Seita.1G049000 1.0kb upstream 1.0kb upstream 4528 true scaffold_1: 4761657-4766184 Setaria italica
Seita.1G049000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4761657-4762656 Setaria italica
Seita.1G049000 1.0kb downstream 1.0kb downstream 4528 true scaffold_1: 4762657-4767184 Setaria italica
Seita.1G049000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4766185-4767184 Setaria italica
Seita.1G049000 2.0kb upstream 2.0kb upstream 5528 true scaffold_1: 4760657-4766184 Setaria italica
Seita.1G049000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4760657-4762656 Setaria italica
Seita.1G049000 2.0kb downstream 2.0kb downstream 5528 true scaffold_1: 4762657-4768184 Setaria italica
Seita.1G049000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4766185-4768184 Setaria italica
Seita.1G049000 5.0kb upstream 5.0kb upstream 8528 true scaffold_1: 4757657-4766184 Setaria italica
Seita.1G049000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4757657-4762656 Setaria italica
Seita.1G049000 5.0kb downstream 5.0kb downstream 8528 true scaffold_1: 4762657-4771184 Setaria italica
Seita.1G049000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4766185-4771184 Setaria italica
Seita.1G049000 10.0kb upstream 10.0kb upstream 13528 true scaffold_1: 4752657-4766184 Setaria italica
Seita.1G049000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4752657-4762656 Setaria italica
Seita.1G049000 10.0kb downstream 10.0kb downstream 13528 true scaffold_1: 4762657-4776184 Setaria italica
Seita.1G049000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4766185-4776184 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184667 5267 Panicoideae View MSA
124576366 5269 Grass View MSA
122047846 5273 Angiosperm View MSA
121345378 5274 Embryophyte View MSA
123424043 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.562     High  
cufflinks 31.528     High  
cufflinks 18.112     High  
cufflinks 19.518     High  
cufflinks 19.081     High  
cufflinks 30.295     High  
cufflinks 24.843     High  
cufflinks 26.947     High  
cufflinks 31.969     High  
cufflinks 28.811     High  
cufflinks 24.264     High  
cufflinks 27.626     High  
cufflinks 33.613     High  
cufflinks 14.04     High Low
cufflinks 15.133     High Low
cufflinks 19.951     High  
cufflinks 20.343     High  
cufflinks 81.574     High High
cufflinks 64.381     High High
cufflinks 20.668     High  

0 Strain