Gene : Seita.1G049200 S. italica v2.2
Defline:  (1 of 6) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  492
Name:  ? Seita.1G049200 Secondary Identifier:  ? PAC:32697403
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G049200 0.5kb upstream 0.5kb upstream 6027 true scaffold_1: 4773041-4779067 Setaria italica
Seita.1G049200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4778568-4779067 Setaria italica
Seita.1G049200 0.5kb downstream 0.5kb downstream 6027 true scaffold_1: 4772541-4778567 Setaria italica
Seita.1G049200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4772541-4773040 Setaria italica
Seita.1G049200 1.0kb upstream 1.0kb upstream 6527 true scaffold_1: 4773041-4779567 Setaria italica
Seita.1G049200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4778568-4779567 Setaria italica
Seita.1G049200 1.0kb downstream 1.0kb downstream 6527 true scaffold_1: 4772041-4778567 Setaria italica
Seita.1G049200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4772041-4773040 Setaria italica
Seita.1G049200 2.0kb upstream 2.0kb upstream 7527 true scaffold_1: 4773041-4780567 Setaria italica
Seita.1G049200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4778568-4780567 Setaria italica
Seita.1G049200 2.0kb downstream 2.0kb downstream 7527 true scaffold_1: 4771041-4778567 Setaria italica
Seita.1G049200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4771041-4773040 Setaria italica
Seita.1G049200 5.0kb upstream 5.0kb upstream 10527 true scaffold_1: 4773041-4783567 Setaria italica
Seita.1G049200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4778568-4783567 Setaria italica
Seita.1G049200 5.0kb downstream 5.0kb downstream 10527 true scaffold_1: 4768041-4778567 Setaria italica
Seita.1G049200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4768041-4773040 Setaria italica
Seita.1G049200 10.0kb upstream 10.0kb upstream 15527 true scaffold_1: 4773041-4788567 Setaria italica
Seita.1G049200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4778568-4788567 Setaria italica
Seita.1G049200 10.0kb downstream 10.0kb downstream 15527 true scaffold_1: 4763041-4778567 Setaria italica
Seita.1G049200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4763041-4773040 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179973 5267 Panicoideae View MSA
124569683 5269 Grass View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.649        
cufflinks 7.48        
cufflinks 3.916        
cufflinks 3.599       Low
cufflinks 3.614       Low
cufflinks 8.467        
cufflinks 6.479        
cufflinks 3.377       Low
cufflinks 4.17        
cufflinks 3.669        
cufflinks 6.935        
cufflinks 23.058     High High
cufflinks 4.875        
cufflinks 4.837        
cufflinks 10.02        
cufflinks 4.754        
cufflinks 9.893        
cufflinks 8.104        
cufflinks 5.565        
cufflinks 26.29     High High

0 Strain