Gene : Seita.1G048800 S. italica v2.2
Defline:  (1 of 57) PF03514 - GRAS domain family (GRAS) Genomic Order:  488
Name:  ? Seita.1G048800 Secondary Identifier:  ? PAC:32697200
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G048800 0.5kb upstream 0.5kb upstream 6058 true scaffold_1: 4723035-4729092 Setaria italica
Seita.1G048800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4723035-4723534 Setaria italica
Seita.1G048800 0.5kb downstream 0.5kb downstream 6058 true scaffold_1: 4723535-4729592 Setaria italica
Seita.1G048800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4729093-4729592 Setaria italica
Seita.1G048800 1.0kb upstream 1.0kb upstream 6558 true scaffold_1: 4722535-4729092 Setaria italica
Seita.1G048800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4722535-4723534 Setaria italica
Seita.1G048800 1.0kb downstream 1.0kb downstream 6558 true scaffold_1: 4723535-4730092 Setaria italica
Seita.1G048800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4729093-4730092 Setaria italica
Seita.1G048800 2.0kb upstream 2.0kb upstream 7558 true scaffold_1: 4721535-4729092 Setaria italica
Seita.1G048800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4721535-4723534 Setaria italica
Seita.1G048800 2.0kb downstream 2.0kb downstream 7558 true scaffold_1: 4723535-4731092 Setaria italica
Seita.1G048800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4729093-4731092 Setaria italica
Seita.1G048800 5.0kb upstream 5.0kb upstream 10558 true scaffold_1: 4718535-4729092 Setaria italica
Seita.1G048800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4718535-4723534 Setaria italica
Seita.1G048800 5.0kb downstream 5.0kb downstream 10558 true scaffold_1: 4723535-4734092 Setaria italica
Seita.1G048800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4729093-4734092 Setaria italica
Seita.1G048800 10.0kb upstream 10.0kb upstream 15558 true scaffold_1: 4713535-4729092 Setaria italica
Seita.1G048800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4713535-4723534 Setaria italica
Seita.1G048800 10.0kb downstream 10.0kb downstream 15558 true scaffold_1: 4723535-4739092 Setaria italica
Seita.1G048800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4729093-4739092 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179462 5267 Panicoideae View MSA
124585376 5269 Grass View MSA
122041925 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.203        
cufflinks 0.339        
cufflinks 0.003     Low Low
cufflinks 0.004     Low Low
cufflinks 0.004     Low Low
cufflinks 0.401        
cufflinks 0.053     Low  
cufflinks 0.013     Low  
cufflinks 0.017     Low  
cufflinks 0.347        
cufflinks 0.27        
cufflinks 0.321        
cufflinks 0.823       High
cufflinks 0.024     Low  
cufflinks 0.747       High
cufflinks 0.043     Low  
cufflinks 0.775       High
cufflinks 0.028     Low  
cufflinks 0.007     Low Low
cufflinks 0.816       High

0 Strain