Gene : Seita.1G050600 S. italica v2.2
Defline:  (1 of 2) KOG4416 - Uncharacterized conserved protein Genomic Order:  506
Name:  ? Seita.1G050600 Secondary Identifier:  ? PAC:32694283
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G050600 0.5kb upstream 0.5kb upstream 8656 true scaffold_1: 4877392-4886047 Setaria italica
Seita.1G050600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4877392-4877891 Setaria italica
Seita.1G050600 0.5kb downstream 0.5kb downstream 8656 true scaffold_1: 4877892-4886547 Setaria italica
Seita.1G050600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4886048-4886547 Setaria italica
Seita.1G050600 1.0kb upstream 1.0kb upstream 9156 true scaffold_1: 4876892-4886047 Setaria italica
Seita.1G050600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4876892-4877891 Setaria italica
Seita.1G050600 1.0kb downstream 1.0kb downstream 9156 true scaffold_1: 4877892-4887047 Setaria italica
Seita.1G050600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4886048-4887047 Setaria italica
Seita.1G050600 2.0kb upstream 2.0kb upstream 10156 true scaffold_1: 4875892-4886047 Setaria italica
Seita.1G050600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4875892-4877891 Setaria italica
Seita.1G050600 2.0kb downstream 2.0kb downstream 10156 true scaffold_1: 4877892-4888047 Setaria italica
Seita.1G050600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4886048-4888047 Setaria italica
Seita.1G050600 5.0kb upstream 5.0kb upstream 13156 true scaffold_1: 4872892-4886047 Setaria italica
Seita.1G050600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4872892-4877891 Setaria italica
Seita.1G050600 5.0kb downstream 5.0kb downstream 13156 true scaffold_1: 4877892-4891047 Setaria italica
Seita.1G050600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4886048-4891047 Setaria italica
Seita.1G050600 10.0kb upstream 10.0kb upstream 18156 true scaffold_1: 4867892-4886047 Setaria italica
Seita.1G050600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4867892-4877891 Setaria italica
Seita.1G050600 10.0kb downstream 10.0kb downstream 18156 true scaffold_1: 4877892-4896047 Setaria italica
Seita.1G050600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4886048-4896047 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177108 5267 Panicoideae View MSA
124584784 5269 Grass View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.971        
cufflinks 8.712       High
cufflinks 4.856        
cufflinks 3.723       Low
cufflinks 3.246       Low
cufflinks 8.742       High
cufflinks 5.5        
cufflinks 6.88        
cufflinks 4.558        
cufflinks 8.912       High
cufflinks 7.392        
cufflinks 7.245        
cufflinks 5.514        
cufflinks 5.001        
cufflinks 9.048       High
cufflinks 4.625        
cufflinks 8.258        
cufflinks 4.509        
cufflinks 4.954        
cufflinks 9.224       High

0 Strain