Gene : Seita.1G053100 S. italica v2.2
Defline:  (1 of 22) PTHR23155//PTHR23155:SF541 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  531
Name:  ? Seita.1G053100 Secondary Identifier:  ? PAC:32697795
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G053100 0.5kb upstream 0.5kb upstream 6030 true scaffold_1: 5105164-5111193 Setaria italica
Seita.1G053100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5105164-5105663 Setaria italica
Seita.1G053100 0.5kb downstream 0.5kb downstream 6030 true scaffold_1: 5105664-5111693 Setaria italica
Seita.1G053100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5111194-5111693 Setaria italica
Seita.1G053100 1.0kb upstream 1.0kb upstream 6530 true scaffold_1: 5104664-5111193 Setaria italica
Seita.1G053100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5104664-5105663 Setaria italica
Seita.1G053100 1.0kb downstream 1.0kb downstream 6530 true scaffold_1: 5105664-5112193 Setaria italica
Seita.1G053100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5111194-5112193 Setaria italica
Seita.1G053100 2.0kb upstream 2.0kb upstream 7530 true scaffold_1: 5103664-5111193 Setaria italica
Seita.1G053100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5103664-5105663 Setaria italica
Seita.1G053100 2.0kb downstream 2.0kb downstream 7530 true scaffold_1: 5105664-5113193 Setaria italica
Seita.1G053100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5111194-5113193 Setaria italica
Seita.1G053100 5.0kb upstream 5.0kb upstream 10530 true scaffold_1: 5100664-5111193 Setaria italica
Seita.1G053100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5100664-5105663 Setaria italica
Seita.1G053100 5.0kb downstream 5.0kb downstream 10530 true scaffold_1: 5105664-5116193 Setaria italica
Seita.1G053100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5111194-5116193 Setaria italica
Seita.1G053100 10.0kb upstream 10.0kb upstream 15530 true scaffold_1: 5095664-5111193 Setaria italica
Seita.1G053100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5095664-5105663 Setaria italica
Seita.1G053100 10.0kb downstream 10.0kb downstream 15530 true scaffold_1: 5105664-5121193 Setaria italica
Seita.1G053100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5111194-5121193 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199797 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.726        
cufflinks 0.017     Low  
cufflinks 0.021     Low  
cufflinks 0.01     Low Low
cufflinks 0.007     Low Low
cufflinks 0.017     Low  
cufflinks 0.177        
cufflinks 0.077     Low  
cufflinks 0.01     Low Low
cufflinks 1.714        
cufflinks 1.625        
cufflinks 3.553       High
cufflinks 4.437       High
cufflinks 0.016     Low  
cufflinks 11.727       High
cufflinks 0.174        
cufflinks 5.918       High
cufflinks 0.092     Low  
cufflinks 0.019     Low  
cufflinks 7.244       High

0 Strain