Gene : Seita.1G052700 S. italica v2.2
Genomic Order:  527 Name:  ? Seita.1G052700
Secondary Identifier:  ? PAC:32697630
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G052700 0.5kb upstream 0.5kb upstream 2578 true scaffold_1: 5046761-5049338 Setaria italica
Seita.1G052700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5048839-5049338 Setaria italica
Seita.1G052700 0.5kb downstream 0.5kb downstream 2578 true scaffold_1: 5046261-5048838 Setaria italica
Seita.1G052700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5046261-5046760 Setaria italica
Seita.1G052700 1.0kb upstream 1.0kb upstream 3078 true scaffold_1: 5046761-5049838 Setaria italica
Seita.1G052700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5048839-5049838 Setaria italica
Seita.1G052700 1.0kb downstream 1.0kb downstream 3078 true scaffold_1: 5045761-5048838 Setaria italica
Seita.1G052700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5045761-5046760 Setaria italica
Seita.1G052700 2.0kb upstream 2.0kb upstream 4078 true scaffold_1: 5046761-5050838 Setaria italica
Seita.1G052700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5048839-5050838 Setaria italica
Seita.1G052700 2.0kb downstream 2.0kb downstream 4078 true scaffold_1: 5044761-5048838 Setaria italica
Seita.1G052700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5044761-5046760 Setaria italica
Seita.1G052700 5.0kb upstream 5.0kb upstream 7078 true scaffold_1: 5046761-5053838 Setaria italica
Seita.1G052700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5048839-5053838 Setaria italica
Seita.1G052700 5.0kb downstream 5.0kb downstream 7078 true scaffold_1: 5041761-5048838 Setaria italica
Seita.1G052700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5041761-5046760 Setaria italica
Seita.1G052700 10.0kb upstream 10.0kb upstream 12078 true scaffold_1: 5046761-5058838 Setaria italica
Seita.1G052700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5048839-5058838 Setaria italica
Seita.1G052700 10.0kb downstream 10.0kb downstream 12078 true scaffold_1: 5036761-5048838 Setaria italica
Seita.1G052700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5036761-5046760 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183684 5267 Panicoideae View MSA
124579345 5269 Grass View MSA
122048505 5273 Angiosperm View MSA
121310990 5274 Embryophyte View MSA
123348350 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.301        
cufflinks 8.257        
cufflinks 5.588       Low
cufflinks 4.518       Low
cufflinks 5.934       Low
cufflinks 9.616        
cufflinks 6.555        
cufflinks 13.216        
cufflinks 6.734        
cufflinks 20.241     High High
cufflinks 9.906        
cufflinks 14.78     High High
cufflinks 14.223     High  
cufflinks 9.072        
cufflinks 11.823        
cufflinks 6.904        
cufflinks 18.206     High High
cufflinks 12.172     High  
cufflinks 6.444        
cufflinks 14.537     High  

0 Strain