Gene : Seita.1G055400 S. italica v2.2
Defline:  (1 of 2) PTHR21641 - TRANSLATION INITIATION FACTOR-RELATED Genomic Order:  554
Name:  ? Seita.1G055400 Secondary Identifier:  ? PAC:32696771
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G055400 0.5kb upstream 0.5kb upstream 2618 true scaffold_1: 5353641-5356258 Setaria italica
Seita.1G055400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5353641-5354140 Setaria italica
Seita.1G055400 0.5kb downstream 0.5kb downstream 2618 true scaffold_1: 5354141-5356758 Setaria italica
Seita.1G055400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5356259-5356758 Setaria italica
Seita.1G055400 1.0kb upstream 1.0kb upstream 3118 true scaffold_1: 5353141-5356258 Setaria italica
Seita.1G055400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5353141-5354140 Setaria italica
Seita.1G055400 1.0kb downstream 1.0kb downstream 3118 true scaffold_1: 5354141-5357258 Setaria italica
Seita.1G055400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5356259-5357258 Setaria italica
Seita.1G055400 2.0kb upstream 2.0kb upstream 4118 true scaffold_1: 5352141-5356258 Setaria italica
Seita.1G055400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5352141-5354140 Setaria italica
Seita.1G055400 2.0kb downstream 2.0kb downstream 4118 true scaffold_1: 5354141-5358258 Setaria italica
Seita.1G055400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5356259-5358258 Setaria italica
Seita.1G055400 5.0kb upstream 5.0kb upstream 7118 true scaffold_1: 5349141-5356258 Setaria italica
Seita.1G055400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5349141-5354140 Setaria italica
Seita.1G055400 5.0kb downstream 5.0kb downstream 7118 true scaffold_1: 5354141-5361258 Setaria italica
Seita.1G055400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5356259-5361258 Setaria italica
Seita.1G055400 10.0kb upstream 10.0kb upstream 12118 true scaffold_1: 5344141-5356258 Setaria italica
Seita.1G055400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5344141-5354140 Setaria italica
Seita.1G055400 10.0kb downstream 10.0kb downstream 12118 true scaffold_1: 5354141-5366258 Setaria italica
Seita.1G055400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5356259-5366258 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176974 5267 Panicoideae View MSA
124590577 5269 Grass View MSA
122047089 5273 Angiosperm View MSA
121344267 5274 Embryophyte View MSA
123425448 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03        
cufflinks 2.438        
cufflinks 2.556        
cufflinks 2.932        
cufflinks 2.21        
cufflinks 2.397        
cufflinks 1.836       Low
cufflinks 3.478        
cufflinks 1.989        
cufflinks 5.246       High
cufflinks 1.934        
cufflinks 2.658        
cufflinks 2.832        
cufflinks 3.966       High
cufflinks 3.2        
cufflinks 1.504       Low
cufflinks 3.665       High
cufflinks 1.633       Low
cufflinks 2.55        
cufflinks 3.623       High

0 Strain