Gene : Seita.1G060500 S. italica v2.2
Genomic Order:  605 Name:  ? Seita.1G060500
Secondary Identifier:  ? PAC:32697280
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G060500 0.5kb upstream 0.5kb upstream 1332 true scaffold_1: 5743362-5744693 Setaria italica
Seita.1G060500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5743362-5743861 Setaria italica
Seita.1G060500 0.5kb downstream 0.5kb downstream 1332 true scaffold_1: 5743862-5745193 Setaria italica
Seita.1G060500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5744694-5745193 Setaria italica
Seita.1G060500 1.0kb upstream 1.0kb upstream 1832 true scaffold_1: 5742862-5744693 Setaria italica
Seita.1G060500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5742862-5743861 Setaria italica
Seita.1G060500 1.0kb downstream 1.0kb downstream 1832 true scaffold_1: 5743862-5745693 Setaria italica
Seita.1G060500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5744694-5745693 Setaria italica
Seita.1G060500 2.0kb upstream 2.0kb upstream 2832 true scaffold_1: 5741862-5744693 Setaria italica
Seita.1G060500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5741862-5743861 Setaria italica
Seita.1G060500 2.0kb downstream 2.0kb downstream 2832 true scaffold_1: 5743862-5746693 Setaria italica
Seita.1G060500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5744694-5746693 Setaria italica
Seita.1G060500 5.0kb upstream 5.0kb upstream 5832 true scaffold_1: 5738862-5744693 Setaria italica
Seita.1G060500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5738862-5743861 Setaria italica
Seita.1G060500 5.0kb downstream 5.0kb downstream 5832 true scaffold_1: 5743862-5749693 Setaria italica
Seita.1G060500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5744694-5749693 Setaria italica
Seita.1G060500 10.0kb upstream 10.0kb upstream 10832 true scaffold_1: 5733862-5744693 Setaria italica
Seita.1G060500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5733862-5743861 Setaria italica
Seita.1G060500 10.0kb downstream 10.0kb downstream 10832 true scaffold_1: 5743862-5754693 Setaria italica
Seita.1G060500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5744694-5754693 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186243 5267 Panicoideae View MSA
124585689 5269 Grass View MSA
122048166 5273 Angiosperm View MSA
121310871 5274 Embryophyte View MSA
123348254 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.025        
cufflinks 0.627       Low
cufflinks 1.467        
cufflinks 1.791        
cufflinks 2.599        
cufflinks 1.252       Low
cufflinks 2.934        
cufflinks 1.787        
cufflinks 1.538        
cufflinks 16.014     High High
cufflinks 3.604        
cufflinks 7.853        
cufflinks 5.944        
cufflinks 8.927       High
cufflinks 6.487        
cufflinks 1.247       Low
cufflinks 5.719        
cufflinks 0.892       Low
cufflinks 6.867        
cufflinks 9.304       High

0 Strain