Gene : Seita.1G066600 S. italica v2.2
Defline:  (1 of 5) PTHR11727 - DIMETHYLADENOSINE TRANSFERASE Genomic Order:  666
Name:  ? Seita.1G066600 Secondary Identifier:  ? PAC:32695633
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G066600 0.5kb upstream 0.5kb upstream 2205 true scaffold_1: 6215563-6217767 Setaria italica
Seita.1G066600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6217268-6217767 Setaria italica
Seita.1G066600 0.5kb downstream 0.5kb downstream 2205 true scaffold_1: 6215063-6217267 Setaria italica
Seita.1G066600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6215063-6215562 Setaria italica
Seita.1G066600 1.0kb upstream 1.0kb upstream 2705 true scaffold_1: 6215563-6218267 Setaria italica
Seita.1G066600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6217268-6218267 Setaria italica
Seita.1G066600 1.0kb downstream 1.0kb downstream 2705 true scaffold_1: 6214563-6217267 Setaria italica
Seita.1G066600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6214563-6215562 Setaria italica
Seita.1G066600 2.0kb upstream 2.0kb upstream 3705 true scaffold_1: 6215563-6219267 Setaria italica
Seita.1G066600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6217268-6219267 Setaria italica
Seita.1G066600 2.0kb downstream 2.0kb downstream 3705 true scaffold_1: 6213563-6217267 Setaria italica
Seita.1G066600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6213563-6215562 Setaria italica
Seita.1G066600 5.0kb upstream 5.0kb upstream 6705 true scaffold_1: 6215563-6222267 Setaria italica
Seita.1G066600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6217268-6222267 Setaria italica
Seita.1G066600 5.0kb downstream 5.0kb downstream 6705 true scaffold_1: 6210563-6217267 Setaria italica
Seita.1G066600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6210563-6215562 Setaria italica
Seita.1G066600 10.0kb upstream 10.0kb upstream 11705 true scaffold_1: 6215563-6227267 Setaria italica
Seita.1G066600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6217268-6227267 Setaria italica
Seita.1G066600 10.0kb downstream 10.0kb downstream 11705 true scaffold_1: 6205563-6217267 Setaria italica
Seita.1G066600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6205563-6215562 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195897 5267 Panicoideae View MSA
124577588 5269 Grass View MSA
122042142 5273 Angiosperm View MSA
121344705 5274 Embryophyte View MSA
123426456 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.89     High High
cufflinks 8.85        
cufflinks 6.453       Low
cufflinks 6.083       Low
cufflinks 6.444       Low
cufflinks 10.3        
cufflinks 8.532        
cufflinks 8.821        
cufflinks 8.433        
cufflinks 5.049       Low
cufflinks 10.692        
cufflinks 14.484     High High
cufflinks 10.706        
cufflinks 7.791        
cufflinks 9.58        
cufflinks 13.927     High  
cufflinks 17.693     High High
cufflinks 19.726     High High
cufflinks 5.462       Low
cufflinks 11.536        

0 Strain