Gene : Seita.1G066300 S. italica v2.2
Defline:  (1 of 19) PF03110 - SBP domain (SBP) Genomic Order:  663
Name:  ? Seita.1G066300 Secondary Identifier:  ? PAC:32693940
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G066300 0.5kb upstream 0.5kb upstream 4148 true scaffold_1: 6181650-6185797 Setaria italica
Seita.1G066300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6185298-6185797 Setaria italica
Seita.1G066300 0.5kb downstream 0.5kb downstream 4148 true scaffold_1: 6181150-6185297 Setaria italica
Seita.1G066300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6181150-6181649 Setaria italica
Seita.1G066300 1.0kb upstream 1.0kb upstream 4648 true scaffold_1: 6181650-6186297 Setaria italica
Seita.1G066300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6185298-6186297 Setaria italica
Seita.1G066300 1.0kb downstream 1.0kb downstream 4648 true scaffold_1: 6180650-6185297 Setaria italica
Seita.1G066300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6180650-6181649 Setaria italica
Seita.1G066300 2.0kb upstream 2.0kb upstream 5648 true scaffold_1: 6181650-6187297 Setaria italica
Seita.1G066300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6185298-6187297 Setaria italica
Seita.1G066300 2.0kb downstream 2.0kb downstream 5648 true scaffold_1: 6179650-6185297 Setaria italica
Seita.1G066300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6179650-6181649 Setaria italica
Seita.1G066300 5.0kb upstream 5.0kb upstream 8648 true scaffold_1: 6181650-6190297 Setaria italica
Seita.1G066300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6185298-6190297 Setaria italica
Seita.1G066300 5.0kb downstream 5.0kb downstream 8648 true scaffold_1: 6176650-6185297 Setaria italica
Seita.1G066300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6176650-6181649 Setaria italica
Seita.1G066300 10.0kb upstream 10.0kb upstream 13648 true scaffold_1: 6181650-6195297 Setaria italica
Seita.1G066300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6185298-6195297 Setaria italica
Seita.1G066300 10.0kb downstream 10.0kb downstream 13648 true scaffold_1: 6171650-6185297 Setaria italica
Seita.1G066300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6171650-6181649 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187743 5267 Panicoideae View MSA
124580549 5269 Grass View MSA
122042410 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121309962 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.264        
cufflinks 1.382       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.477       High
cufflinks 0.367        
cufflinks 0.392        
cufflinks 0.211        
cufflinks 0.197     Low  
cufflinks 0.236        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.217        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.079     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain