Gene : Seita.1G069500 S. italica v2.2
Defline:  (1 of 1) PTHR11699:SF49 - SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL Genomic Order:  695
Name:  ? Seita.1G069500 Secondary Identifier:  ? PAC:32695419
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4321 Setaria italica pathologic  
Sitalica PWY-6473 Setaria italica pathologic  
Sitalica PWY-6535 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G069500 0.5kb upstream 0.5kb upstream 11292 true scaffold_1: 6428934-6440225 Setaria italica
Seita.1G069500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6439726-6440225 Setaria italica
Seita.1G069500 0.5kb downstream 0.5kb downstream 11292 true scaffold_1: 6428434-6439725 Setaria italica
Seita.1G069500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6428434-6428933 Setaria italica
Seita.1G069500 1.0kb upstream 1.0kb upstream 11792 true scaffold_1: 6428934-6440725 Setaria italica
Seita.1G069500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6439726-6440725 Setaria italica
Seita.1G069500 1.0kb downstream 1.0kb downstream 11792 true scaffold_1: 6427934-6439725 Setaria italica
Seita.1G069500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6427934-6428933 Setaria italica
Seita.1G069500 2.0kb upstream 2.0kb upstream 12792 true scaffold_1: 6428934-6441725 Setaria italica
Seita.1G069500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6439726-6441725 Setaria italica
Seita.1G069500 2.0kb downstream 2.0kb downstream 12792 true scaffold_1: 6426934-6439725 Setaria italica
Seita.1G069500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6426934-6428933 Setaria italica
Seita.1G069500 5.0kb upstream 5.0kb upstream 15792 true scaffold_1: 6428934-6444725 Setaria italica
Seita.1G069500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6439726-6444725 Setaria italica
Seita.1G069500 5.0kb downstream 5.0kb downstream 15792 true scaffold_1: 6423934-6439725 Setaria italica
Seita.1G069500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6423934-6428933 Setaria italica
Seita.1G069500 10.0kb upstream 10.0kb upstream 20792 true scaffold_1: 6428934-6449725 Setaria italica
Seita.1G069500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6439726-6449725 Setaria italica
Seita.1G069500 10.0kb downstream 10.0kb downstream 20792 true scaffold_1: 6418934-6439725 Setaria italica
Seita.1G069500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6418934-6428933 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186483 5267 Panicoideae View MSA
124585020 5269 Grass View MSA
122045886 5273 Angiosperm View MSA
121345720 5274 Embryophyte View MSA
123427690 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.786       High
cufflinks 2.689       Low
cufflinks 2.759       Low
cufflinks 2.782       Low
cufflinks 3.237        
cufflinks 3.126       Low
cufflinks 4.614        
cufflinks 4.804        
cufflinks 4.922        
cufflinks 4.298        
cufflinks 4.703        
cufflinks 9.182       High
cufflinks 7.046        
cufflinks 3.532        
cufflinks 4.8        
cufflinks 5.109        
cufflinks 8.455       High
cufflinks 12.892     High High
cufflinks 4.392        
cufflinks 6.265        

0 Strain