Gene : Seita.1G069700 S. italica v2.2
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  697
Name:  ? Seita.1G069700 Secondary Identifier:  ? PAC:32695355
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G069700 0.5kb upstream 0.5kb upstream 5610 true scaffold_1: 6444330-6449939 Setaria italica
Seita.1G069700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6449440-6449939 Setaria italica
Seita.1G069700 0.5kb downstream 0.5kb downstream 5610 true scaffold_1: 6443830-6449439 Setaria italica
Seita.1G069700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6443830-6444329 Setaria italica
Seita.1G069700 1.0kb upstream 1.0kb upstream 6110 true scaffold_1: 6444330-6450439 Setaria italica
Seita.1G069700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6449440-6450439 Setaria italica
Seita.1G069700 1.0kb downstream 1.0kb downstream 6110 true scaffold_1: 6443330-6449439 Setaria italica
Seita.1G069700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6443330-6444329 Setaria italica
Seita.1G069700 2.0kb upstream 2.0kb upstream 7110 true scaffold_1: 6444330-6451439 Setaria italica
Seita.1G069700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6449440-6451439 Setaria italica
Seita.1G069700 2.0kb downstream 2.0kb downstream 7110 true scaffold_1: 6442330-6449439 Setaria italica
Seita.1G069700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6442330-6444329 Setaria italica
Seita.1G069700 5.0kb upstream 5.0kb upstream 10110 true scaffold_1: 6444330-6454439 Setaria italica
Seita.1G069700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6449440-6454439 Setaria italica
Seita.1G069700 5.0kb downstream 5.0kb downstream 10110 true scaffold_1: 6439330-6449439 Setaria italica
Seita.1G069700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6439330-6444329 Setaria italica
Seita.1G069700 10.0kb upstream 10.0kb upstream 15110 true scaffold_1: 6444330-6459439 Setaria italica
Seita.1G069700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6449440-6459439 Setaria italica
Seita.1G069700 10.0kb downstream 10.0kb downstream 15110 true scaffold_1: 6434330-6449439 Setaria italica
Seita.1G069700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6434330-6444329 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182429 5267 Panicoideae View MSA
124579399 5269 Grass View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.149        
cufflinks 2.979        
cufflinks 7.9       High
cufflinks 7.165       High
cufflinks 5.852       High
cufflinks 3.135        
cufflinks 3.842        
cufflinks 4.996        
cufflinks 5.341        
cufflinks 1.441       Low
cufflinks 1.991        
cufflinks 2.299        
cufflinks 1.845       Low
cufflinks 6.542       High
cufflinks 1.686       Low
cufflinks 4.3        
cufflinks 2.312        
cufflinks 3.658        
cufflinks 3.021        
cufflinks 1.948        

0 Strain