Gene : Seita.1G068500 S. italica v2.2
Defline:  (1 of 21) PF04782 - Protein of unknown function (DUF632) (DUF632) Genomic Order:  685
Name:  ? Seita.1G068500 Secondary Identifier:  ? PAC:32697612
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G068500 0.5kb upstream 0.5kb upstream 2920 true scaffold_1: 6339417-6342336 Setaria italica
Seita.1G068500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6339417-6339916 Setaria italica
Seita.1G068500 0.5kb downstream 0.5kb downstream 2920 true scaffold_1: 6339917-6342836 Setaria italica
Seita.1G068500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6342337-6342836 Setaria italica
Seita.1G068500 1.0kb upstream 1.0kb upstream 3420 true scaffold_1: 6338917-6342336 Setaria italica
Seita.1G068500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6338917-6339916 Setaria italica
Seita.1G068500 1.0kb downstream 1.0kb downstream 3420 true scaffold_1: 6339917-6343336 Setaria italica
Seita.1G068500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6342337-6343336 Setaria italica
Seita.1G068500 2.0kb upstream 2.0kb upstream 4420 true scaffold_1: 6337917-6342336 Setaria italica
Seita.1G068500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6337917-6339916 Setaria italica
Seita.1G068500 2.0kb downstream 2.0kb downstream 4420 true scaffold_1: 6339917-6344336 Setaria italica
Seita.1G068500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6342337-6344336 Setaria italica
Seita.1G068500 5.0kb upstream 5.0kb upstream 7420 true scaffold_1: 6334917-6342336 Setaria italica
Seita.1G068500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6334917-6339916 Setaria italica
Seita.1G068500 5.0kb downstream 5.0kb downstream 7420 true scaffold_1: 6339917-6347336 Setaria italica
Seita.1G068500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6342337-6347336 Setaria italica
Seita.1G068500 10.0kb upstream 10.0kb upstream 12420 true scaffold_1: 6329917-6342336 Setaria italica
Seita.1G068500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6329917-6339916 Setaria italica
Seita.1G068500 10.0kb downstream 10.0kb downstream 12420 true scaffold_1: 6339917-6352336 Setaria italica
Seita.1G068500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6342337-6352336 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179768 5267 Panicoideae View MSA
124572228 5269 Grass View MSA
122046534 5273 Angiosperm View MSA
121350303 5274 Embryophyte View MSA
123381668 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.398        
cufflinks 1.512        
cufflinks 7.095       High
cufflinks 6.633       High
cufflinks 3.394        
cufflinks 2.35        
cufflinks 3.55        
cufflinks 3.305        
cufflinks 2.956        
cufflinks 0.654       Low
cufflinks 1.872        
cufflinks 1.349       Low
cufflinks 1.946        
cufflinks 7.259       High
cufflinks 1.828        
cufflinks 3.221        
cufflinks 1.149       Low
cufflinks 2.574        
cufflinks 6.443       High
cufflinks 1.56        

0 Strain