Gene : Seita.1G070900 S. italica v2.2
Defline:  (1 of 6) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  709
Name:  ? Seita.1G070900 Secondary Identifier:  ? PAC:32694771
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G070900 0.5kb upstream 0.5kb upstream 5913 true scaffold_1: 6518254-6524166 Setaria italica
Seita.1G070900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6518254-6518753 Setaria italica
Seita.1G070900 0.5kb downstream 0.5kb downstream 5913 true scaffold_1: 6518754-6524666 Setaria italica
Seita.1G070900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6524167-6524666 Setaria italica
Seita.1G070900 1.0kb upstream 1.0kb upstream 6413 true scaffold_1: 6517754-6524166 Setaria italica
Seita.1G070900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6517754-6518753 Setaria italica
Seita.1G070900 1.0kb downstream 1.0kb downstream 6413 true scaffold_1: 6518754-6525166 Setaria italica
Seita.1G070900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6524167-6525166 Setaria italica
Seita.1G070900 2.0kb upstream 2.0kb upstream 7413 true scaffold_1: 6516754-6524166 Setaria italica
Seita.1G070900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6516754-6518753 Setaria italica
Seita.1G070900 2.0kb downstream 2.0kb downstream 7413 true scaffold_1: 6518754-6526166 Setaria italica
Seita.1G070900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6524167-6526166 Setaria italica
Seita.1G070900 5.0kb upstream 5.0kb upstream 10413 true scaffold_1: 6513754-6524166 Setaria italica
Seita.1G070900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6513754-6518753 Setaria italica
Seita.1G070900 5.0kb downstream 5.0kb downstream 10413 true scaffold_1: 6518754-6529166 Setaria italica
Seita.1G070900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6524167-6529166 Setaria italica
Seita.1G070900 10.0kb upstream 10.0kb upstream 15413 true scaffold_1: 6508754-6524166 Setaria italica
Seita.1G070900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6508754-6518753 Setaria italica
Seita.1G070900 10.0kb downstream 10.0kb downstream 15413 true scaffold_1: 6518754-6534166 Setaria italica
Seita.1G070900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6524167-6534166 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177707 5267 Panicoideae View MSA
124578380 5269 Grass View MSA
122045942 5273 Angiosperm View MSA
121346195 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.487     High  
cufflinks 15.767     High  
cufflinks 11.533     High  
cufflinks 11.218     High  
cufflinks 10.41       Low
cufflinks 16.187     High  
cufflinks 14.297     High  
cufflinks 7.871       Low
cufflinks 9.555       Low
cufflinks 9.257       Low
cufflinks 16.94     High  
cufflinks 18.916     High High
cufflinks 20.253     High High
cufflinks 11.778        
cufflinks 22.038     High High
cufflinks 16.275     High  
cufflinks 15.6     High  
cufflinks 17.403     High  
cufflinks 10.246       Low
cufflinks 17.988     High  

0 Strain